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insilicomerging
•
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4
votes
8
replies
1.8k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
8.7 years ago
svlachavas
▴ 830
0
votes
6
replies
2.4k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 10.7 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
Li Liu
▴ 100
1
vote
5
replies
1.9k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.0 years ago by
Matthew McCall
▴ 830 • written 9.0 years ago by
svlachavas
▴ 830
6
votes
4
replies
4.0k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
svlachavas
▴ 830
1
vote
3
replies
1.1k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Adam_M
• 0
0
votes
3
replies
1.6k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
Shamim Sarhadi
▴ 20
0
votes
2
replies
1.5k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.9 years ago
Ed Siefker
▴ 230
1
vote
2
replies
2.3k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
8.8 years ago
alakatos
▴ 130
0
votes
1
reply
1.4k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.2 years ago
andreas.pittroff
• 0
0
votes
1
reply
1.3k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.0 years ago by
Quentin De Clerck
▴ 10 • written 10.0 years ago by
François Lefebvre
▴ 50
0
votes
0
replies
940
views
problem with insilicoMerging
insilicomerging
8.9 years ago
carol white
▴ 680
0
votes
0
replies
1.1k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
9.4 years ago
Li Liu
▴ 100
0
votes
0
replies
640
views
table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.0 years ago
pratikshasharma47
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
by
Gordon Smyth
50k
No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …
Comment: Error EPICv2 ChAMP
by
James W. MacDonald
65k
You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…
Votes
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
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