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installation
•
reset
1
vote
11
replies
2.3k
views
Had to remove duplicated() in order to install GenomicRanges 1.22 on top of 1.20 on linux
installation
genomicranges
summarizedexperiment
8.4 years ago • updated 8.3 years ago
knb
• 0
0
votes
6
replies
7.8k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 4.5 years ago by
leoadam014
• 0 • written 5.4 years ago by
boboshaq
• 0
3
votes
17
replies
14k
views
DESeq2 installation error
installation
updated 6.5 years ago by
Cheng-Yuan Kao
▴ 100 • written 8.6 years ago by
seeker
• 0
3
votes
12
replies
2.3k
views
Error installing cn.mops and Rsamtools in R 3.1.3
rsamtools
cn.mops
installation
9.0 years ago • updated 8.9 years ago
Spollen, William G.
▴ 30
0
votes
5
replies
2.6k
views
warning directory not writable
installation
9.1 years ago
Eric P
▴ 10
1
vote
4
replies
5.4k
views
Issue to install biomaRt, Gviz, rtracklayer, and S4Vectors under BioC 3.0
installation
9.5 years ago
Tiphaine Martin
▴ 40
4
votes
6
replies
3.6k
views
biovizBase package installation fails
biovizbase
installation
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
ville.q.rantanen
• 0
0
votes
3
replies
2.0k
views
Trouble installing splatter
installation
splatter
6.9 years ago
luke.zappia
▴ 50
2
votes
8
replies
2.2k
views
Cannot install xps package, Mac OS 10.11, R 3.3
xps
installation
updated 7.3 years ago by
cstrato
★ 3.9k • written 7.3 years ago by
Sophie Marion de Proce
• 0
0
votes
2
replies
1.9k
views
reactome.db install problem
installation
5.9 years ago
xinfu.xia
• 0
0
votes
2
replies
2.0k
views
Problems installing ChipPeakAnno with newest version of R and Bioconductor
chippeakanno
installation
8.4 years ago
rebecca.halbach
• 0
8
votes
2
replies
1.7k
views
Bioconductor package versions
installation
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
robin073
• 0
0
votes
2
replies
1.6k
views
Package installation errors for Bioconductor and easyRNASeq
installation
biocinstaller
easyrnaseq
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
michael.dhar
• 0
5
votes
6
replies
1.7k
views
Cannot find function treatDGE() in package edgeR?
edger
installation
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
ejliaw
• 0
0
votes
3
replies
2.4k
views
How to Install Bioconductor libraries to manually selected location?
installation
9.4 years ago
goochmi
• 0
4
votes
9
replies
5.3k
views
Not able to re-install DESeq2 after R quit
deseq2
installation
8.3 years ago
carman1979
• 0
4
votes
5
replies
1.7k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq
installation
4.2 years ago
gdalsky
▴ 40
3
votes
7
replies
2.4k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 8.2 years ago by
angela.oliveira.pisco
• 0 • written 8.4 years ago by
davide risso
▴ 950
0
votes
3
replies
2.7k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
21 months ago
elmfinds
• 0
2
votes
2
replies
6.0k
views
package install issue (ubuntu 14.04, R 3.2.1)
package
installation
8.7 years ago
doublehelixlf
▴ 10
3
votes
5
replies
5.6k
views
Problem while installing Rsubread
installation
rsubread
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
jackeikee
• 0
0
votes
5
replies
6.3k
views
Problem in BSgenome.Hsapiens.UCSC.hg19 Installation
bsgenome
installation
software error
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
nabaneeta85
• 0
5
votes
5
replies
794
views
Installation: go to specific version of a package prompted
software error
installation
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
GENOMIC_region
• 0
2
votes
2
replies
3.4k
views
Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago • updated 8.5 years ago
Ulrik Stervbo
▴ 30
1
vote
5
replies
1.7k
views
error in installing bioconductor
installation
updated 7.0 years ago by
b.nota
▴ 360 • written 7.0 years ago by
farahqureshi5
• 0
3
votes
5
replies
10k
views
Problem Installing limma package
limma
software error
installation
package installation
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
segador67
• 0
3
votes
3
replies
1.2k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 3.7 years ago by
Laurent Gatto
1.6k • written 3.9 years ago by
sreedta8
▴ 10
11
votes
11
replies
15k
views
cannot install edgeR on M1 Mac
apple
m1
installation
silicon
updated 2.2 years ago by
Gordon Smyth
50k • written 2.7 years ago by
Brian
▴ 90
3
votes
3
replies
3.8k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller
installation
TxDb
updated 9.2 years ago by
Marc Carlson
★ 7.2k • written 9.2 years ago by
Laurent Gatto
1.6k
0
votes
1
reply
1.2k
views
seqlm installation error
software error
R
installation
updated 7.1 years ago by
Marcel Ramos
690 • written 7.2 years ago by
niutster
• 0
0
votes
4
replies
3.6k
views
Biostrings throwing error
biostrings
installation
package
keepNA
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
prim-and-proper
• 0
0
votes
2
replies
1.9k
views
Having trouble updating Bioconductor
installation
update
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
debg
• 0
0
votes
1
reply
1.9k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
Tiphaine Martin
▴ 40
1
vote
2
replies
1.5k
views
how to load edgeR each time I start R?
edger
bioclite
installation
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
lplough
• 0
0
votes
3
replies
2.8k
views
ERROR: compilation failed for package RSQLite
ubuntu
installation
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Deleted
▴ 70
0
votes
5
replies
3.7k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
jol.espinoz
▴ 40
0
votes
4
replies
5.6k
views
Please help me with the error of " installation of package had non-zero exit status"
bioconductor
r packages
installation
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Sara
▴ 10
1
vote
1
reply
5.0k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install
installation
biocinstaller
8.7 years ago
tresch
• 0
0
votes
6
replies
2.2k
views
Chipseeker is unavabile on Linux CentOS7 ?
Bioconduct or
Chipseeker
CentOS7
Linux
installation
updated 7.4 years ago by
Guangchuang Yu
★ 1.2k • written 7.4 years ago by
spsp9987
• 0
2
votes
2
replies
3.6k
views
Can not install deSolve
installation
compilation error
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
geparada88
▴ 10
2
votes
7
replies
1.7k
views
Bioconductor Installation may be insecure against man-in-the-middle attacks
security
http
source
installation
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
will.townes
• 0
0
votes
1
reply
2.4k
views
Bioconductor installation problem
installation
biocLite
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
liangc.mu
▴ 10
0
votes
1
reply
3.6k
views
Loading R packages without internet
installation
updated 9.4 years ago by
Laurent Gatto
1.6k • written 9.4 years ago by
tpsilverdoe
• 0
2
votes
4
replies
1.8k
views
Error installing Rgraphviz
installation
rgraphviz
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
prochlorothrix
• 0
0
votes
1
reply
1.5k
views
Problems installing flowCore
installation
8.2 years ago
nigelhenry
• 0
1
vote
1
reply
9.0k
views
Problems to install a package - Ubuntu
ubuntu
package
installation
varianttools
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
lelemraposo
• 0
2
votes
2
replies
2.4k
views
mzR installation problem
software error
mzr
installation
updated 9.4 years ago by
Laurent Gatto
1.6k • written 9.4 years ago by
yizhong99
▴ 10
0
votes
1
reply
627
views
Survival package update problem
installation
3.3.1
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tahunami
• 0
2
votes
3
replies
1.2k
views
Cannot install Rhtslib on Mac OS 10.13
rhstlib
installation
compilation error
5.9 years ago
Ryan C. Thompson
★ 7.9k
1
vote
1
reply
2.0k
views
Problem installing BioStrings
installation
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
stalbot
▴ 10
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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