Bioconductor Interaction model

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603

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edger design model interaction model rnaseq

updated 5.0 years ago by James W. MacDonald 64k • written 5.0 years ago by cody0071 • 0

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798

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deseq2 interaction model differential expression

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by aec ▴ 90

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10k

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deseq2 experimental design interaction model

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by ljcohen ▴ 30

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1.6k

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deseq2 interaction model nested design

6.7 years ago glocke01 ▴ 10

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1.6k

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deseq2 interaction model multiple factor design multifactorial design

6.7 years ago jhutchin • 0

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1.4k

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limma interaction model

updated 7.5 years ago by Gordon Smyth 49k • written 7.5 years ago by PJ • 0

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4.0k

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limma microarray interaction model multiple factor design makeContrasts

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by svlachavas ▴ 820

7 results • Page 1 of 1

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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k

There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k

Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

yes i turned it off @mikelove

Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k

It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…

Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k

I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…

Votes

Answer: WGCNA documentation not available

Comment: Can the limma package be applied to Log2 RUV-normalized data?

Answer: Correct the batch effect in methylation analysis in R

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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