Showing : interaction • reset
4
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DESeq2 - multifactorial design
LRT DESeq2 interaction
updated 6 weeks ago by 2.8k • written 8 weeks ago by ▴ 10
3
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7
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LIMMA: ~ continuous predictor by group. How to get within-group results?
limma interaction
8 months ago Sindre ▴ 100
3
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1
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128
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Obtain p-values for group * condition interaction using DESeq2?
DESeq2 interaction differential expression
updated 10 months ago by 32k • written 10 months ago by ▴ 100
0
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1
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103
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mircomb analysis from deg's list
mircomb mrna mirna degs interaction
10 months ago andreia • 0
0
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3
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128
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interaction models DESeq2
deseq2 interaction model
updated 10 months ago by 32k • written 10 months ago by ▴ 70
0
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2
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98
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Direct interactions in graphite ?
graphite interaction
updated 12 months ago by ▴ 100 • written 12 months ago by • 0
2
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5
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136
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How to extract DESeq2 results for an interaction design
deseq2 interaction
updated 15 months ago by ▴ 50 • written 15 months ago by • 0
0
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1
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545
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random effects + interaction term + limma
random effects interaction limma rna-seq
24 months ago flippy23 • 0
0
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1
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221
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differentail expression analysis with interaction terms
edger deseq2 interaction design matrix
updated 2.2 years ago by 56k • written 2.2 years ago by ★ 1.5k
0
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1
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391
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Add interaction term between variables to DEXSeq design
DEXSeq interaction
2.3 years ago zhenzuo2 • 0
0
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0
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Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
2.7 years ago rubi ▴ 90
11 results • Page 1 of 1
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Replies
Comment: Limma paired analysis design question by jefflincoln4 • 0
Thank you Gordon. One more thing, why use the log of blood iron concentration?
Answer: Limma paired analysis design question by Gordon Smyth 42k
Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…
Comment: Extracting the findPalindrome() results by Hervé Pagès 14k
Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…
Comment: Compute fgsea with my own database with R version 4.0.2 by assaron ▴ 190
I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…
Comment: Error installing Deseq2 by ATpoint ▴ 590
Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…
Votes
Comment: DESeq2 with high range of within-group variability
Comment: problem regarding differential gene express analysis
Comment: Normalisation in DESeq2
Answer: Compute fgsea with my own database with R version 4.0.2
Comment: lmFit, number of proteins
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