Bioconductor Interaction

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1.0k

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DESeq2 interaction coefficient LinearModel RNASeq

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Pedro Milanez-Almeida ▴ 10

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876

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interaction DESeq2

updated 2.8 years ago by swbarnes2 ★ 1.4k • written 2.8 years ago by Tait • 0

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5.0k

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DifferentialExpression contrasts interaction DESeq2

written 3.0 years ago by Nicole ▴ 10

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998

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DESeq2 interaction pairwise

3.7 years ago Lucas • 0

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8.5k

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LRT DESeq2 interaction

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by annamariabugaj ▴ 10

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1.5k

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limma interaction

4.7 years ago Sindre ▴ 110

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1.4k

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DESeq2 interaction differential expression

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by charles.foster ▴ 180

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1.1k

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mircomb mrna mirna degs interaction

4.9 years ago andreia ▴ 10

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1.4k

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deseq2 interaction model

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by aec ▴ 90

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1.1k

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graphite interaction

updated 5.1 years ago by gabriele.sales ▴ 100 • written 5.1 years ago by emisecherre • 0

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2.1k

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deseq2 interaction

updated 5.3 years ago by sebastian.lobentanzer ▴ 60 • written 5.3 years ago by ktrns • 0

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1.6k

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random effects interaction limma rna-seq

6.0 years ago flippy23 • 0

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967

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edger deseq2 interaction design matrix

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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DEXSeq interaction

6.3 years ago zhenzuo2 • 0

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1.1k

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edge differential gene expression timecourse interaction

6.8 years ago rubi ▴ 110

15 results • Page 1 of 1

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Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Comment: cannot download atena annotation for human by Davide • 0

Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …

Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove by macdonaldfrench7286566 • 0

Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Kateřina • 0

I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!

Votes

Answer: parameters of filterByExpr

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change

Answer: GAlignments Cigar to GRanges

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