Showing : interaction • reset
1
vote
2
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199
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pairwise comparison + interaction term in DESeq2
DESeq2 interaction pairwise
5 months ago Lucas • 0
4
votes
18
replies
936
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DESeq2 - multifactorial design
LRT DESeq2 interaction
updated 10 months ago by 3.4k • written 10 months ago by ▴ 10
3
votes
7
replies
457
views
LIMMA: ~ continuous predictor by group. How to get within-group results?
limma interaction
17 months ago Sindre ▴ 110
3
votes
1
reply
287
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Obtain p-values for group * condition interaction using DESeq2?
DESeq2 interaction differential expression
updated 18 months ago by 35k • written 18 months ago by ▴ 110
0
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1
reply
266
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mircomb analysis from deg's list
mircomb mrna mirna degs interaction
19 months ago andreia • 0
0
votes
3
replies
264
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interaction models DESeq2
deseq2 interaction model
updated 19 months ago by 35k • written 19 months ago by ▴ 70
0
votes
2
replies
249
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Direct interactions in graphite ?
graphite interaction
updated 21 months ago by ▴ 100 • written 21 months ago by • 0
2
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5
replies
363
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How to extract DESeq2 results for an interaction design
deseq2 interaction
updated 2.0 years ago by ▴ 50 • written 2.0 years ago by • 0
0
votes
1
reply
673
views
random effects + interaction term + limma
random effects interaction limma rna-seq
2.7 years ago flippy23 • 0
0
votes
1
reply
309
views
differentail expression analysis with interaction terms
edger deseq2 interaction design matrix
updated 3.0 years ago by 58k • written 3.0 years ago by ★ 1.5k
0
votes
1
reply
522
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Add interaction term between variables to DEXSeq design
DEXSeq interaction
3.0 years ago zhenzuo2 • 0
0
votes
0
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427
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Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
3.5 years ago rubi ▴ 100
12 results • Page 1 of 1
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Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Matthew • 0
Thanks for the suggestion, I'll give that a try! Based on the PCA, all three factors do tend to influence the results, so I'll try the colu…
Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Comment: Unable to install Rhtslib in R-4.1.1 by cf2209 • 0
Thank you for your input I appreciate it. I will revise and make changes to this post as you suggested. Unfortunately I am not able to do t…
Votes
Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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