Bioconductor Interaction

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690

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DESeq2 interaction coefficient LinearModel RNASeq

updated 17 months ago by Michael Love 41k • written 17 months ago by Pedro Milanez-Almeida ▴ 10

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655

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interaction DESeq2

updated 21 months ago by swbarnes2 ★ 1.3k • written 21 months ago by Tait • 0

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3.3k

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DifferentialExpression contrasts interaction DESeq2

written 24 months ago by Nicole ▴ 10

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789

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DESeq2 interaction pairwise

2.7 years ago Lucas • 0

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6.0k

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LRT DESeq2 interaction

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by annamariabugaj ▴ 10

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1.1k

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limma interaction

3.7 years ago Sindre ▴ 110

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1.0k

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DESeq2 interaction differential expression

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by charles.foster ▴ 160

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819

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mircomb mrna mirna degs interaction

3.8 years ago andreia ▴ 10

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1.0k

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deseq2 interaction model

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by aec ▴ 90

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808

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graphite interaction

updated 4.0 years ago by gabriele.sales ▴ 100 • written 4.0 years ago by emisecherre • 0

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1.4k

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deseq2 interaction

updated 4.2 years ago by sebastian.lobentanzer ▴ 50 • written 4.2 years ago by ktrns • 0

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1.2k

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random effects interaction limma rna-seq

4.9 years ago flippy23 • 0

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731

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edger deseq2 interaction design matrix

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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974

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DEXSeq interaction

5.3 years ago zhenzuo2 • 0

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853

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edge differential gene expression timecourse interaction

5.7 years ago rubi ▴ 110

15 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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