Bioconductor Interaction

Showing : interaction • reset

votes

replies

3.3k

views

DifferentialExpression contrasts interaction DESeq2

written 23 months ago by Nicole ▴ 10

votes

687

views

DESeq2 interaction coefficient LinearModel RNASeq

updated 16 months ago by Michael Love 41k • written 17 months ago by Pedro Milanez-Almeida ▴ 10

votes

651

views

interaction DESeq2

updated 20 months ago by swbarnes2 ★ 1.3k • written 21 months ago by Tait • 0

vote

replies

784

views

DESeq2 interaction pairwise

2.7 years ago Lucas • 0

votes

replies

5.9k

views

LRT DESeq2 interaction

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by annamariabugaj ▴ 10

votes

replies

1.1k

views

limma interaction

3.7 years ago • updated 3.6 years ago Sindre ▴ 110

votes

1.0k

views

DESeq2 interaction differential expression

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by charles.foster ▴ 160

votes

813

views

mircomb mrna mirna degs interaction

3.8 years ago andreia ▴ 10

vote

replies

997

views

deseq2 interaction model

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by aec ▴ 90

votes

replies

806

views

graphite interaction

updated 4.0 years ago by gabriele.sales ▴ 100 • written 4.0 years ago by emisecherre • 0

votes

replies

1.4k

views

deseq2 interaction

updated 4.2 years ago by sebastian.lobentanzer ▴ 50 • written 4.2 years ago by ktrns • 0

votes

1.2k

views

random effects interaction limma rna-seq

4.9 years ago flippy23 • 0

votes

728

views

edger deseq2 interaction design matrix

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

votes

969

views

DEXSeq interaction

5.3 years ago zhenzuo2 • 0

votes

replies

847

views

edge differential gene expression timecourse interaction

5.7 years ago rubi ▴ 110

15 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Comment: DESeq2 setting significant p-value by Dev • 0

after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …

Votes

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Awards • All