Bioconductor Interactionset

Showing : interactionset • reset

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1.8k

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interactionset granges

updated 7.6 years ago by Aaron Lun ★ 29k • written 7.6 years ago by Vinicius Henrique da Silva ▴ 40

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1.5k

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InteractionSet structural variants

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by tangming2005 ▴ 200

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1.8k

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diffhic hic interactionset contactmatrix inflate

updated 8.3 years ago by Aaron Lun ★ 29k • written 8.3 years ago by hwick1 ▴ 20

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2.3k

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DESeq2 multifactorialdesign interaction InteractionSet

updated 7 months ago by Michael Love 43k • written 7 months ago by Integrative • 0

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2.0k

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diffhic interactionset

9.5 years ago Vivek.b ▴ 100

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3.0k

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DEGcomparison DESeq2 InteractionSet pvalue

24 months ago • updated 23 months ago paria.alipour • 0

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974

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InteractionSet subsetByOverlaps GenomicInteractions

2.6 years ago Laureano Tomás-Daza ▴ 10

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1.9k

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InteractionSet

4.6 years ago noag • 0

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1.5k

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InteractionSet GInteractions

2.1 years ago Sarah ▴ 10

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1.8k

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genomicinteractions gviz interactionset

updated 7.2 years ago by liz.ingsimmons ▴ 140 • written 7.2 years ago by ferbecneu • 0

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1.5k

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InteractionSet BuildReport

3.0 years ago martin.grigorov ▴ 10

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1.4k

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diffHic HiC InteractionSet

updated 5.8 years ago by Aaron Lun ★ 29k • written 5.8 years ago by girardot • 0

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1.7k

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S4 Rcpp InteractionSet IRanges Rle

updated 5.7 years ago by Aaron Lun ★ 29k • written 5.7 years ago by lklei001 • 0

13 results • Page 1 of 1

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Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: GSEA in R/Bioconductor course by a2a2haa • 0

Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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