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ioniser
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IONiseR error when using the readFast5Summary function on nanopore data
ioniser
software error
bioconductor
7.5 years ago
mv340788
• 0
3
votes
8
replies
1.7k
views
Problem with readFast5Summary in IONiseR related to HDF5
ioniser
bioinformatics
minion
updated 6.6 years ago by
Lescai, Francesco
▴ 380 • written 7.1 years ago by
nathaniellegall
• 0
0
votes
4
replies
1.1k
views
IONiseR readFast5Summary Error
ioniser
7.1 years ago
ferrato
• 0
0
votes
3
replies
1.0k
views
IONiseR error when trying to call readFast5Summary on fast5 reads
IONiseR
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
artemd
• 0
0
votes
2
replies
901
views
ONiseR readFast5Summary Error
IONiseR
updated 7.6 years ago by
Mike Smith
★ 6.5k • written 7.6 years ago by
kaganr
• 0
0
votes
2
replies
830
views
Problem with the readFast5Summary command
ioniser
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
ferrato
• 0
0
votes
1
reply
911
views
IONiseR readFast5Summary Error H5Aopen(gid, "num_events")
IONiseR
Minion
updated 7.3 years ago by
Mike Smith
★ 6.5k • written 7.3 years ago by
christophe.klopp
• 0
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
marka
• 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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