Bioconductor Isobar

Showing : isobar • reset

votes

replies

512

views

isobar phosphors phosphoproteomics label-free phosphopeptides

updated 4.8 years ago by shepherl 3.8k • written 4.8 years ago by imees • 0

votes

replies

1.6k

views

isobar Shovelware

updated 8.1 years ago by florian.bw ▴ 20 • written 8.4 years ago by Dario Strbenac ★ 1.5k

votes

1.2k

views

isobar

8.3 years ago paul.jenoe • 0

vote

replies

1.7k

views

isobar mzid mgf proteomics itraq

updated 9.3 years ago by Laurent Gatto 1.6k • written 9.3 years ago by queso012 • 0

votes

replies

1.1k

views

isobar isobar

updated 10.5 years ago by Dan Tenenbaum ★ 8.2k • written 10.5 years ago by Trinidad Martín Campos ▴ 10

5 results • Page 1 of 1

Recent ...

Replies

Answer: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

The genes are automatically ordered within `fgsea`, there is no need to sort them manually.

Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All