Bioconductor Isoformswitchanalyzer

Showing : isoformswitchanalyzer • reset

votes

views

DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 5 days ago by Michael Love 41k • written 5 days ago by 09191919 • 0

votes

replies

142

views

IsoformSwitchAnalyzeR

6 weeks ago Henry • 0

votes

replies

266

views

stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by sumitra.20 • 0

votes

replies

302

views

IsoformSwitchAnalyzeR satuRn

7 months ago jbono ▴ 10

vote

replies

1.4k

views

salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 8 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

vote

628

views

IsoformSwitchAnalyzeR

10 months ago venura • 0

votes

428

views

IsoformSwitchAnalyzeR

10 months ago Callum • 0

votes

replies

367

views

Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

votes

replies

1.3k

views

dplyr IsoformSwitchAnalyzeR

written 12 months ago by ramon.dslps • 0

votes

replies

1.7k

views

AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf

written 20 months ago by bpshtiwan ▴ 10

votes

replies

2.2k

views

isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

vote

replies

1.2k

views

isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

12 results • Page 1 of 1

Recent ...

Replies

Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Comment: How to retrieve gene ontology GO class? by bandconductor • 0

Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Awards • All