Showing : isoformswitchanalyzer • reset
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10
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Error in reading data on isoformswitchanalyzeR
isoformswitchanalyzeR rna-seq splice-variants
written 5.0 years ago by • 0
2
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8
replies
1.7k
views
Error in Create switchAnalyzeRlist
AlternativeSplicing RNASeq IsoformSwitchAnalyzeR gtf
written 20 months ago by ▴ 10
1
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2
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1.4k
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IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
salmon IsoformSwitchAnalyzeR tximport RNASeqData
updated 8 months ago by ▴ 120 • written 8 months ago by ▴ 10
0
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3
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1.3k
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Error in ImportRData
dplyr IsoformSwitchAnalyzeR
written 12 months ago by • 0
1
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5
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1.2k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 5.4 years ago by ▴ 40
1
vote
1
reply
623
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IsoformSwitchAnalyzeR Error in reading GTF file
IsoformSwitchAnalyzeR
9 months ago venura • 0
0
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1
reply
425
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Error with IsoformSwitchAnalyzer: analyzePFAM
IsoformSwitchAnalyzeR
10 months ago Callum • 0
0
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0
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364
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
11 months ago Craig • 0
0
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0
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298
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DTU analysis with factorial model
IsoformSwitchAnalyzeR satuRn
7 months ago jbono ▴ 10
0
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0
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257
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help with converting MSTRG tags with isoformswictanalyzer
stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf
updated 4 months ago by 65k • written 4 months ago by • 0
0
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0
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137
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To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
6 weeks ago Henry • 0
0
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1
reply
52
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ONT long-read RNA sequencing - data analysis options
DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq
updated 1 day ago by 41k • written 1 day ago by • 0
12 results • Page 1 of 1
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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