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Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
•
0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem?
I have tried `library(BiocParallel) regi…
Comment: cellCounts() function floating point error
by
Wei Shi
★
3.3k
Yes we are currently working on generating a small example for cellCounts.
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
by
ksong
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0
Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
by
Yang Shi
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0
Hi Prof. James, I'm confused with the procedures used for filtering the unexpressed genes mentioned here. Why is the cutoff based on intron…
Comment: Problem converting transcript to genomic coordinates with Annotation Hub
by
nattzy94
▴
10
Hi Johannes,
Sorry to revive an old thread. I am facing the above problem as I am using a custom GTF assembled from in-house RNA-Seq data.…
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