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jaspar
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Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
motifdb
JASPAR
transcription factor binding site
8.5 years ago
Lisa Hopcroft
▴ 40
2
votes
0
replies
1.5k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 5.3 years ago by
Bioconductor Community
0 • written 5.4 years ago by
chrisclarkson100
▴ 50
2
votes
1
reply
2.3k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.6 years ago by
Ge Tan
▴ 20 • written 6.6 years ago by
chrisclarkson100
▴ 50
0
votes
2
replies
801
views
trouble accessing JASPAR2018.sqlite
jaspar
rsqlite
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
m.d.shapiro
• 0
0
votes
3
replies
1.7k
views
Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 8.9 years ago by
emercier
• 0 • written 8.9 years ago by
w.jarassier
• 0
0
votes
0
replies
775
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.4 years ago
rbronste
▴ 60
0
votes
1
reply
1.3k
views
TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools
jaspar
updated 8.5 years ago by
Ge Tan
▴ 20 • written 8.5 years ago by
JasonLouisStein
• 0
0
votes
1
reply
1.3k
views
TF ANALYSIS USING JASPAR
transcription
jaspar
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
nia
▴ 30
8 results • Page
1 of 1
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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