Bioconductor Junctionseq

Showing : junctionseq • reset

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1.4k

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DEXSeq JunctionSeq RNAseq QoRTs

3.9 years ago n.tear ▴ 20

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.1 years ago stuart ▴ 10

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954

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JunctionSeq

7.8 years ago rachelrodgers12 • 0

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967

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junctionseq relevel reference

7.9 years ago Assa Yeroslaviz ★ 1.5k

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1.1k

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junctionseq qorts multiple factor design relevel

7.9 years ago Assa Yeroslaviz ★ 1.5k

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1.6k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 8.1 years ago by Steve Lianoglou ★ 13k • written 8.1 years ago by l.frank • 0

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956

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junctionseq

8.2 years ago jbono ▴ 10

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1000

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junctionseq design and contrast matrix

8.3 years ago stuart • 0

8 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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