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karyoploteR
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Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
12 months ago
Shreyash
• 0
9
votes
5
replies
1.4k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
rtt100
• 0
0
votes
1
reply
809
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
mpigozzi
• 0
4
votes
5
replies
2.8k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 4.6 years ago by
bernatgel
▴ 150 • written 4.6 years ago by
Aditya
▴ 160
0
votes
1
reply
839
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 5.0 years ago by
bernatgel
▴ 150 • written 5.0 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
1.9k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 6.5 years ago by
bernatgel
▴ 150 • written 6.5 years ago by
kirannbishwa01
▴ 10
1
vote
2
replies
1.2k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 6.6 years ago by
bgel
▴ 10 • written 6.6 years ago by
spr
▴ 10
0
votes
0
replies
858
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
6.8 years ago
Radek
▴ 90
8 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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Peter Hickey
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Alejandro Reyes
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