Bioconductor Karyoploter

Showing : karyoploter • reset

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211

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

5 months ago Shreyash • 0

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920

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 12 months ago by James W. MacDonald 63k • written 12 months ago by rtt100 • 0

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634

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KaryoploteR

updated 3.1 years ago by Kevin Blighe 3.8k • written 3.1 years ago by mpigozzi • 0

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2.4k

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karyoploter

updated 4.1 years ago by bernatgel ▴ 150 • written 4.1 years ago by Aditya ▴ 160

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653

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karyoploteR

updated 4.4 years ago by bernatgel ▴ 150 • written 4.4 years ago by saeed Ur Rehman • 0

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1.7k

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software error R bsgenome karyoploter

updated 5.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by kirannbishwa01 • 0

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996

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karyoploter

updated 6.0 years ago by bgel ▴ 10 • written 6.0 years ago by spr ▴ 10

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723

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KaryoploteR

6.2 years ago Radek ▴ 90

8 results • Page 1 of 1

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Answer: Problems with FLOWAI by SHASHI • 0

Additionally, if you're looking to clean FCS data files, you can utilize an R script. I've prepared a comprehensive YouTube tutorial to aid…

Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Votes

Answer: How do I merge a list of GRanges?

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC

Comment: DiffBind: dba.plotProfile(profiles)

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