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karyoploter
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Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
11 months ago
Shreyash
• 0
9
votes
5
replies
1.4k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
rtt100
• 0
0
votes
1
reply
788
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
mpigozzi
• 0
4
votes
5
replies
2.7k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 4.6 years ago by
bernatgel
▴ 150 • written 4.6 years ago by
Aditya
▴ 160
0
votes
1
reply
818
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 4.9 years ago by
bernatgel
▴ 150 • written 4.9 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
1.9k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 6.4 years ago by
bernatgel
▴ 150 • written 6.4 years ago by
kirannbishwa01
• 0
1
vote
2
replies
1.2k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 6.5 years ago by
bgel
▴ 10 • written 6.5 years ago by
spr
▴ 10
0
votes
0
replies
844
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
6.7 years ago
Radek
▴ 90
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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