Bioconductor Karyoploter

Showing : karyoploter • reset

votes

replies

views

GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

6 weeks ago • updated 5 weeks ago Shreyash • 0

votes

replies

630

views

BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 8 months ago by James W. MacDonald 63k • written 8 months ago by rtt100 • 0

votes

570

views

KaryoploteR

updated 2.8 years ago by Kevin Blighe 3.8k • written 2.8 years ago by mpigozzi • 0

votes

replies

2.1k

views

karyoploter

updated 3.7 years ago by bernatgel ▴ 150 • written 3.7 years ago by Aditya ▴ 160

votes

577

views

karyoploteR

updated 4.1 years ago by bernatgel ▴ 150 • written 4.1 years ago by saeed Ur Rehman • 0

votes

1.6k

views

software error R bsgenome karyoploter

updated 5.6 years ago by bernatgel ▴ 150 • written 5.6 years ago by kirannbishwa01 • 0

vote

replies

898

views

karyoploter

updated 5.7 years ago by bgel ▴ 10 • written 5.7 years ago by spr ▴ 10

votes

replies

654

views

KaryoploteR

5.9 years ago Radek ▴ 90

8 results • Page 1 of 1

Recent ...

Replies

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…

Comment: Interpret plot from DiffBind by Chris • 0

If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…

Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k