Bioconductor Kegga

Showing : kegga • reset

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3.9k

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edger kegga keggrest

8.3 years ago Likai Mao ▴ 40

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edgeR limma annotationhub kegga annotationdbi

updated 7.8 years ago by cagenet34 ▴ 20 • written 8.1 years ago by Rinaldo Bertossa ▴ 20

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limma kegga goanna

updated 8.3 years ago by Gordon Smyth 50k • written 8.3 years ago by Guido Hooiveld ★ 3.9k

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limma kegga orgdb

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by baus87 • 0

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topgo edger limma kegga kegg

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by mictadlo ▴ 10

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kegga

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by mat149 ▴ 70

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1.6k

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kegga limma pathway analysis kegg

updated 5.0 years ago by Gordon Smyth 50k • written 5.0 years ago by Raito92 ▴ 60

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limma goana kegga

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by Ahdee ▴ 50

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limma kegga

updated 7.5 years ago by Gordon Smyth 50k • written 7.5 years ago by miyakokodama • 0

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edger kegga

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by cronanz • 0

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edger goana kegga

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by jfreixas • 0

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limma missMethyl gometh goana kegga

updated 6.8 years ago by Gordon Smyth 50k • written 6.9 years ago by Jenny Drnevich ★ 2.0k

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edgeR kegga KEGG

updated 5.7 years ago by James W. MacDonald 65k • written 5.7 years ago by bernsmq • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0