Showing : keggprofile • reset
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convertId returning "attempt to select less than one element in integerOneIndex" Error
bioconductor annotation keggprofile
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
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run KEGGprofile sofware on UNIX server
keggprofile UNIX error exit
9.4 years ago gregory voisin ▴ 430
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Re: KEGGprofile: "Error in phyper - Non-numeric argument to mathematical function" when using non model organism
Organism KEGGprofile
9.6 years ago zhao shilin ▴ 60
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KEGGprofile: "Error in phyper - Non-numeric argument to mathematical function" when using non model organism
KEGGprofile
updated 9.6 years ago by ▴ 60 • written 9.6 years ago by ▴ 80
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About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.7 years ago by ★ 1.6k • written 10.7 years ago by ▴ 660
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Overrepresentation pathway with KEGGPROFILE and SPIA
Proteomics Pathways KEGGprofile Proteomics Pathways KEGGprofile
11.3 years ago slzhao ▴ 10
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Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways SPIA KEGGprofile Pathways SPIA KEGGprofile
11.3 years ago Tarca, Adi ▴ 570
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About Rstudio via Amazon web services.
GO KEGGprofile GO KEGGprofile
11.3 years ago Dan Tenenbaum ★ 8.2k
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Kegg Profile package problem
GO KEGGprofile GO KEGGprofile
11.3 years ago gregory voisin ▴ 430
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Problem to download Kegg map from KEGGprofile package
GO KEGGprofile GO KEGGprofile
11.3 years ago gregory voisin ▴ 430
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Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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