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knitr
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Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
7.5 years ago
Jon Bråte
▴ 250
4
votes
4
replies
1.9k
views
.onLoad failed in loadNamespace() for 'BiocInstaller'
software error
knitr
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
idomtamir
▴ 10
0
votes
1
reply
1.3k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.0 years ago
kmezhoud
▴ 10
1
vote
1
reply
1.1k
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
Keith Hughitt
▴ 180
0
votes
1
reply
821
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio
MOFA2
bug
knitr
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Kevin Coombes
▴ 430
0
votes
5
replies
781
views
knitr error in sort.int - unable to knit a chunk with boxplot codes
knitr
boxplot
updated 4.3 years ago by
James W. MacDonald
65k • written 4.3 years ago by
poojitha.stemcell
▴ 10
6 results • Page
1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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