Bioconductor Lfc

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17k

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deseq2 deseq lfc lfcse standard error

updated 7.0 years ago by rraadd_8 • 0 • written 7.1 years ago by tootiki • 0

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13k

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deseq2 lfc coef contrast

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by Anke Busch ▴ 10

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1.4k

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deseq2 LFC LRT

written 5.2 years ago by sally.badawi • 0

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1.5k

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deseq2 lfc betaprior

updated 17 months ago by Michael Love 41k • written 5.4 years ago by Mariaxi • 0

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2.7k

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limma microarray DEGs p values lfc

6.8 years ago rkp • 0

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2.2k

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microarray limma multiple treatments lfc

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by brionyk9 • 0

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765

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GLM prior DESeq LFC

updated 22 months ago by Michael Love 41k • written 22 months ago by stew • 0

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1.1k

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RNAseq LFC DEseq

2.9 years ago ayy2110 • 0

8 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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