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lfcthreshold
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DESeq2 lfcThreshold - all my padj are equal to 1
DESeq2
lfcThreshold
19 months ago • updated 18 months ago
Abir.khazaal
▴ 10
1
vote
2
replies
1.6k
views
DEseq2 anlysis - LfcThreshold and Lfcshrink options
lfcshrink
DESeq2
RNASeq
lfcthreshold
20 months ago
ClaudiaE
• 0
0
votes
5
replies
1.9k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 2.5 years ago by
Michael Love
41k • written 3.9 years ago by
Iryna
• 0
22
votes
17
replies
7.0k
views
DESeq2 1.20.0 lfcshrink function
deseq2
differential expression
logfoldchange
lfcshrink
lfcthreshold
updated 2.8 years ago by
Michael Love
41k • written 5.8 years ago by
emi.sch
▴ 30
0
votes
1
reply
1.0k
views
DESeq2 - shrunken log fold changes and threshold test
deseq2
lfcshrink
lfcthreshold
differential gene expression
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
corentinrichard374369
• 0
1
vote
2
replies
2.2k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
Mike
▴ 10
9
votes
2
replies
5.2k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold
deseq2
updated 6.2 years ago by
Michael Love
41k • written 6.3 years ago by
lirongrossmann
▴ 80
2
votes
1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
mariakarand
▴ 20
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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