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2
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2
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3.4k
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Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago
Ulrik Stervbo
▴ 30
0
votes
1
reply
1.0k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.6 years ago by
Mike Smith
★ 6.5k • written 4.6 years ago by
kodherif
• 0
0
votes
4
replies
2.8k
views
Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
2.4 years ago
kristoffersandas
• 0
3
votes
3
replies
1.5k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 9.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.1 years ago by
Malcolm Cook
★ 1.6k
1
vote
2
replies
2.7k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
7.4 years ago
tah340
• 0
1
vote
2
replies
4.8k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
kmu004
▴ 50
3
votes
2
replies
2.5k
views
Rqc - envir must be either NULL, a list, or an environment.
software error
bug
library
updated 7.2 years ago by
Welliton de Souza
▴ 70 • written 7.2 years ago by
guus.steeg
▴ 10
0
votes
1
reply
2.5k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
Maria
• 0
3
votes
3
replies
1.5k
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 7.1 years ago by
Paul Shannon
▴ 470 • written 7.1 years ago by
Pengcheng Yang
▴ 60
0
votes
1
reply
1.3k
views
ALL Library and ALL Data Set error
bioconductor
R
library
software error
ALL library
7.2 years ago
alyssa.ylescu
• 0
1
vote
1
reply
3.0k
views
[Windows 10] 64. Problem installing biocLite due Warning on non writable directory
installation
windows10
not-writable
warning message
library
8.4 years ago
juancaf
• 0
0
votes
1
reply
1.4k
views
Loading library with name in a variable
library
characters
9.3 years ago
Patrick Schorderet
▴ 20
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 9 months ago by
Vincent J. Carey, Jr.
6.7k • written 9 months ago by
Ndimensional
▴ 20
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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