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2
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2
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3.4k
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Problem with HDF5 and ncdfFlow
installation
dependency
library
hdf5
8.6 years ago
Ulrik Stervbo
▴ 30
0
votes
1
reply
1.0k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.5 years ago by
Mike Smith
★ 6.5k • written 4.5 years ago by
kodherif
• 0
0
votes
4
replies
2.7k
views
Normalization by variance stabilizing transformation VST
library
composition
vst
DESeq2
Normalization
2.3 years ago
kristoffersandas
• 0
3
votes
3
replies
1.5k
views
Using a single R installation with multiple BioConductor library installations - opinions & best practices sought
version
release
library
updated 9.0 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.0 years ago by
Malcolm Cook
★ 1.6k
1
vote
2
replies
2.7k
views
Corrupt Database Error When Loading qvalue() Package
qvalue
library
software error
package installation
package updates
7.4 years ago
tah340
• 0
1
vote
2
replies
4.8k
views
ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation"
variantannotation
library
error
updated 8.6 years ago by
Valerie Obenchain
★ 6.8k • written 8.6 years ago by
kmu004
▴ 50
3
votes
2
replies
2.5k
views
Rqc - envir must be either NULL, a list, or an environment.
software error
bug
library
updated 7.2 years ago by
Welliton de Souza
▴ 70 • written 7.2 years ago by
guus.steeg
▴ 10
0
votes
1
reply
2.5k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto
fatal error
library
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
Maria
• 0
3
votes
3
replies
1.5k
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 7.0 years ago by
Paul Shannon
▴ 470 • written 7.0 years ago by
Pengcheng Yang
▴ 60
0
votes
1
reply
1.3k
views
ALL Library and ALL Data Set error
bioconductor
R
library
software error
ALL library
7.2 years ago
alyssa.ylescu
• 0
1
vote
1
reply
3.0k
views
[Windows 10] 64. Problem installing biocLite due Warning on non writable directory
installation
windows10
not-writable
warning message
library
8.4 years ago
juancaf
• 0
0
votes
1
reply
1.4k
views
Loading library with name in a variable
library
characters
9.3 years ago
Patrick Schorderet
▴ 20
3
votes
5
replies
1.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 8 months ago by
Vincent J. Carey, Jr.
6.7k • written 8 months ago by
Ndimensional
▴ 20
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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