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liftOver
•
reset
0
votes
0
replies
471
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
13 months ago
bonheur
• 0
2
votes
2
replies
1.5k
views
broken chain import in liftOver
lifto
liftOver
updated 23 months ago by
Marcel Ramos
690 • written 23 months ago by
james.dalgleish
• 0
2
votes
3
replies
1.6k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.3k
views
How to convert build 37 to build 38?
liftOver
updated 3.4 years ago by
shepherl
3.8k • written 3.4 years ago by
bluepebbles
• 0
0
votes
0
replies
813
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
3.4 years ago
geneprophet
• 0
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
ang
▴ 20
0
votes
1
reply
1.1k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.8k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
m.guelfi
• 0
0
votes
2
replies
1.7k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.1k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
JustGettinStarted
• 0
11 results • Page
1 of 1
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Replies
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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