Bioconductor LiftOver

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software error liftOver workflowinstall package installation

updated 7.5 years ago by James W. MacDonald 65k • written 7.5 years ago by JustGettinStarted • 0

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rtracklayer liftover bioconductor R

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by m.guelfi • 0

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liftOver rtracklayer

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Mikhail Dozmorov ▴ 30

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lifto liftOver

updated 23 months ago by Marcel Ramos 690 • written 23 months ago by james.dalgleish • 0

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hg19 liftover matrixeqtl DMRcate

updated 4.9 years ago by James W. MacDonald 65k • written 4.9 years ago by yoursbassanio ▴ 10

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814

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liftOver

3.5 years ago geneprophet • 0

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rtracklayer export.bw liftover

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by ang ▴ 20

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liftover rtracklayer

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by beausoleilmo • 0

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471

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liftOver SNP GWASTools

13 months ago bonheur • 0

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rtracklayer liftOver parameters minMatch

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by Nik dAK ▴ 10

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1.3k

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liftOver

updated 3.4 years ago by shepherl 3.8k • written 3.4 years ago by bluepebbles • 0

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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