Bioconductor Liftover

Showing : liftover • reset

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1.5k

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lifto liftOver

updated 23 months ago by Marcel Ramos 690 • written 23 months ago by james.dalgleish • 0

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1.7k

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liftover rtracklayer

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by beausoleilmo • 0

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2.8k

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rtracklayer liftover bioconductor R

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by m.guelfi • 0

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1.1k

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rtracklayer liftOver parameters minMatch

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by Nik dAK ▴ 10

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1.2k

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rtracklayer export.bw liftover

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by ang ▴ 20

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1.2k

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hg19 liftover matrixeqtl DMRcate

updated 4.9 years ago by James W. MacDonald 65k • written 4.9 years ago by yoursbassanio ▴ 10

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1.6k

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liftOver rtracklayer

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Mikhail Dozmorov ▴ 30

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2.1k

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software error liftOver workflowinstall package installation

updated 7.6 years ago by James W. MacDonald 65k • written 7.6 years ago by JustGettinStarted • 0

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479

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liftOver SNP GWASTools

13 months ago bonheur • 0

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821

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liftOver

3.5 years ago geneprophet • 0

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1.3k

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liftOver

updated 3.4 years ago by shepherl 3.8k • written 3.4 years ago by bluepebbles • 0

11 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0