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liftover
•
reset
0
votes
0
replies
442
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
12 months ago
bonheur
• 0
2
votes
2
replies
1.4k
views
broken chain import in liftOver
lifto
liftOver
updated 22 months ago by
Marcel Ramos
690 • written 22 months ago by
james.dalgleish
• 0
2
votes
3
replies
1.5k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.2k
views
How to convert build 37 to build 38?
liftOver
updated 3.3 years ago by
shepherl
3.8k • written 3.3 years ago by
bluepebbles
• 0
0
votes
0
replies
791
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
3.4 years ago
geneprophet
• 0
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 5.3 years ago by
Michael Lawrence
★ 11k • written 5.3 years ago by
ang
▴ 20
0
votes
1
reply
1.1k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.8k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
m.guelfi
• 0
0
votes
2
replies
1.6k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.1k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
JustGettinStarted
• 0
11 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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