Showing : limmagui • reset
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma limmaGUI beta
21 months ago fluentin44 • 0
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 160
3
votes
6
replies
6.4k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago jaydengitt • 0
0
votes
6
replies
2.2k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 10 • written 15.7 years ago by ▴ 50
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui proteomics
8.4 years ago vedran.franke • 0
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.8 years ago by • 0 • written 14.5 years ago by ▴ 60
1
vote
5
replies
1000
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI normalization limma voom Normalization
updated 9 months ago by 50k • written 9 months ago by • 0
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.0 years ago Gordon Smyth 50k
1
vote
4
replies
351
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 9 weeks ago by 50k • written 10 weeks ago by ▴ 10
0
votes
4
replies
1.4k
views
getting normexp (and log2 transformed) values - not further-processed M values
Microarray limma limmaGUI Microarray limma limmaGUI
14.5 years ago adoty@umd.edu ▴ 30
0
votes
4
replies
1.1k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 18.7 years ago by ▴ 170 • written 18.7 years ago by 50k
6
votes
4
replies
967
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.3 years ago • updated 2.2 years ago Giovanni • 0
0
votes
3
replies
1.3k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
15.5 years ago Gordon Smyth 50k
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.7 years ago by ★ 3.4k • written 18.8 years ago by ▴ 170
0
votes
3
replies
1.2k
views
limma: print-tip loess and empty spots
Normalization GO GUI limma limmaGUI Normalization GO GUI limma limmaGUI
16.9 years ago Gordon Smyth 50k
0
votes
3
replies
1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.7 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
3
replies
2.0k
views
Limma: correct calculation of B statistics (log odds)
limma limmaGUI limma limmaGUI
updated 18.0 years ago by ▴ 290 • written 18.0 years ago by ★ 1.9k
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
1
vote
3
replies
305
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 4 days ago by 50k • written 9 days ago by • 0
0
votes
2
replies
2.2k
views
problem with tkrplot installation
limmaGUI limmaGUI
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 50
0
votes
2
replies
867
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 90 • written 15.7 years ago by ▴ 140
0
votes
2
replies
1.2k
views
limmaGUI: target file and spot file
limmaGUI limmaGUI
updated 15.7 years ago by ▴ 910 • written 15.7 years ago by ▴ 10
0
votes
2
replies
849
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.8 years ago by ▴ 40 • written 18.8 years ago by ▴ 110
0
votes
2
replies
264
views
limma model matrix questions
limmaGUI limma pairedsamples
8 weeks ago whyw6948 • 0
0
votes
2
replies
880
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 40
1
vote
2
replies
939
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
18 months ago walkerrh95 • 0
0
votes
2
replies
974
views
Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 18.1 years ago by 65k • written 18.1 years ago by ★ 1.9k
0
votes
2
replies
943
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 18.4 years ago by ▴ 150 • written 18.4 years ago by ▴ 110
0
votes
2
replies
790
views
gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 90
0
votes
2
replies
1.2k
views
limmaGUI: Warning: ActiveTcl could not be found....
limmaGUI limmaGUI
updated 20.5 years ago by ▴ 810 • written 20.5 years ago by ▴ 770
0
votes
2
replies
1.1k
views
limmaGUI: Warning: ActiveTcl could not be found...
limmaGUI limmaGUI
updated 20.5 years ago by ▴ 770 • written 20.5 years ago by ▴ 1000
0
votes
2
replies
889
views
LimmaGUI Background corrections
limmaGUI limmaGUI
updated 19.6 years ago by 50k • written 19.6 years ago by ▴ 160
0
votes
2
replies
1.1k
views
help for limmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 16.9 years ago by ★ 1.9k • written 16.9 years ago by ▴ 10
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
18.4 years ago Gordon Smyth 50k
0
votes
2
replies
1.1k
views
problem detected during utilization of LimmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 14.4 years ago by ★ 7.4k • written 14.4 years ago by ▴ 10
0
votes
1
reply
839
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.6 years ago by ▴ 1000 • written 19.6 years ago by ▴ 100
0
votes
1
reply
899
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 30
0
votes
1
reply
784
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 80
0
votes
1
reply
951
views
LimmaGUI
limmaGUI limmaGUI
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 100
0
votes
1
reply
1.5k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.6 years ago by ▴ 160 • written 20.6 years ago by ▴ 1000
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
0
votes
1
reply
1.0k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.8 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.2k
views
One-Color Agilent Data into Limma GUI
GO limma limmaGUI GO limma limmaGUI
updated 16.5 years ago by ★ 1.9k • written 16.5 years ago by ▴ 230
0
votes
1
reply
1.1k
views
asMatrixWeights: weights of unexpected shape
GUI limma limmaGUI GUI limma limmaGUI
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by 50k
0
votes
1
reply
1.5k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.5 years ago by ▴ 320 • written 15.5 years ago by ▴ 90
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Locations • All
France, just now
United States, 7 minutes ago
Brazil, 10 minutes ago
Italy, 15 minutes ago
United States, 19 minutes ago
Traffic: 739 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6