Showing : limmagui • reset
6
votes
4
replies
964
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.2 years ago Giovanni • 0
3
votes
6
replies
6.4k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago • updated 2.1 years ago jaydengitt • 0
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui proteomics
8.4 years ago vedran.franke • 0
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma limmaGUI beta
21 months ago fluentin44 • 0
1
vote
2
replies
935
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
18 months ago walkerrh95 • 0
1
vote
4
replies
343
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 9 weeks ago by 50k • written 9 weeks ago by ▴ 10
1
vote
1
reply
771
views
Weird distribution of p-values, with no significant adjusted p-values?
fdr limmaGUI p-values limma
updated 18 months ago by 65k • written 18 months ago by • 0
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.8 years ago by • 0 • written 14.5 years ago by ▴ 60
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
1
vote
5
replies
985
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI normalization limma voom Normalization
updated 9 months ago by 50k • written 9 months ago by • 0
1
vote
3
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266
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 19 hours ago by 50k • written 5 days ago by • 0
0
votes
0
replies
988
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
20.1 years ago James Wettenhall ▴ 1000
0
votes
1
reply
783
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 80
0
votes
0
replies
778
views
limmaGUI problem
limma limmaGUI limma limmaGUI
20.1 years ago Ron Ophir ▴ 80
0
votes
1
reply
949
views
LimmaGUI
limmaGUI limmaGUI
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 100
0
votes
0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.5k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.6 years ago by ▴ 160 • written 20.6 years ago by ▴ 1000
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
0
votes
1
reply
789
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 760
0
votes
0
replies
639
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization limma limmaGUI Normalization limma limmaGUI
20.5 years ago ying chen ▴ 30
0
votes
0
replies
786
views
limmaGUI & affylmGUI new features/fixes
Genetics Normalization limmaGUI Genetics Normalization limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
736
views
limmaGUI update
limma limmaGUI limma limmaGUI
19.8 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.0k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.8 years ago James Wettenhall ▴ 1000
0
votes
2
replies
865
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 10
0
votes
2
replies
1.2k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 50
0
votes
0
replies
861
views
limmaGUI_1.2.5 ImaGene fix
limmaGUI limmaGUI
19.8 years ago James Wettenhall ▴ 1000
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 160
0
votes
1
reply
897
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.7 years ago by ▴ 1000 • written 19.7 years ago by ▴ 30
0
votes
0
replies
798
views
Re: limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
19.7 years ago Elizabeth Brooke-Powell ▴ 160
0
votes
1
reply
836
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.6 years ago by ▴ 1000 • written 19.6 years ago by ▴ 100
0
votes
0
replies
1.0k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
19.9 years ago James Wettenhall ▴ 1000
0
votes
2
replies
874
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 40
0
votes
1
reply
1.5k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.5 years ago by ▴ 320 • written 15.5 years ago by ▴ 90
0
votes
1
reply
874
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 19.3 years ago by ▴ 1000 • written 19.4 years ago by ▴ 50
0
votes
0
replies
733
views
gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
751
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
19.4 years ago Breuk102 ▴ 50
0
votes
2
replies
942
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"
limmaGUI limmaGUI
19.1 years ago Noam Drigues ▴ 10
0
votes
1
reply
775
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 170
0
votes
0
replies
644
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
19.0 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
889
views
MA plot (using fitted M values)
limmaGUI limmaGUI
19.0 years ago Choon Wei Wee ▴ 10
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.0 years ago Gordon Smyth 50k
0
votes
0
replies
517
views
Help with Duplicates
limmaGUI limmaGUI
18.9 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
0
votes
2
replies
845
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.8 years ago by ▴ 40 • written 18.8 years ago by ▴ 110
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.7 years ago by ★ 3.4k • written 18.7 years ago by ▴ 170
0
votes
0
replies
1.3k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.7 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
846
views
spot filtering
limma limmaGUI limma limmaGUI
18.7 years ago Gordon Smyth 50k
0
votes
0
replies
672
views
LimmaGUI Error
Normalization GO limmaGUI Normalization GO limmaGUI
18.7 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
903
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
Recent ...
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Answer: The issue with SGSeq_analyzeFeatures() returns errors on BAM files by kamryncole1963 • 0
https://support.bioconductor.org/p/85837/[tunnel rush][1] Refer to this link, it may help. [1]: https://tunnelrush3.com
Comment: flowStats Search Error by SamGG ▴ 350
So do I. The direct URL is https://bioconductor.org/packages/3.18/bioc/html/flowStats.html
Comment: Interaction Terms in DESeq2 - Shrinkage by andrebolerbarros ▴ 20
Thanks for your suggestion! For `apeglm` shrinkage, on that scenario, I would have to relevel the variable and then re-run with `nbinomWal…
Answer: Interaction Terms in DESeq2 - Shrinkage by swbarnes2 ★ 1.3k
I think the simpler way to do it is to make a new column of conc_time_tissue all stuck together, and make that column your design. Then …
Comment: SingleR Label.Ont by lisia • 0
De online casino's bij [One Casino][1] zullen je achterlaten met de mooiste herinneringen. De site geeft je een geweldige kans om een keuze…
Votes
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
Answer: How to retrieve detailed regression results from deseq2
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