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limmagui
•
reset
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets
widgetTools
limmaGUI
widgetInvoke
tkWidgets
widgetTools
limmaGUI
widgetInvoke
18.8 years ago
chris umbricht
▴ 110
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma
limmaGUI
beta
21 months ago
fluentin44
• 0
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI
limmaGUI
updated 19.8 years ago by
Gordon Smyth
50k • written 19.8 years ago by
Elizabeth Brooke-Powell
▴ 160
3
votes
6
replies
6.4k
views
Unable to install "limma" package on RStudio
Bioconductor
limma
limmaGUI
2.2 years ago
jaydengitt
• 0
0
votes
6
replies
2.2k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI
limmaGUI
affylmGUI
limmaGUI
updated 15.7 years ago by
ilhami visne
▴ 10 • written 15.7 years ago by
Deanne Taylor
▴ 50
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui
proteomics
8.4 years ago
vedran.franke
• 0
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics
limma
impute
limmaGUI
Proteomics
limma
impute
limmaGUI
updated 8.8 years ago by
sm
• 0 • written 14.5 years ago by
Tom Wenseleers
▴ 60
1
vote
5
replies
1000
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI
normalization
limma
voom
Normalization
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
manuelsokolov
• 0
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma
limmaGUI
limma
limmaGUI
19.0 years ago
Gordon Smyth
50k
1
vote
4
replies
352
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 9 weeks ago by
Gordon Smyth
50k • written 10 weeks ago by
Jitendra
▴ 10
0
votes
4
replies
1.4k
views
getting normexp (and log2 transformed) values - not further-processed M values
Microarray
limma
limmaGUI
Microarray
limma
limmaGUI
14.6 years ago • updated 14.5 years ago
adoty@umd.edu
▴ 30
0
votes
4
replies
1.1k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization
GO
limmaGUI
ASSIGN
Normalization
GO
limmaGUI
ASSIGN
updated 18.7 years ago by
Brooke-Powell, Elizabeth
▴ 170 • written 18.7 years ago by
Gordon Smyth
50k
6
votes
4
replies
967
views
Limma prametrization
limm
MathematicalBiology
limmaGUI
StatisticalMethod
2.3 years ago • updated 2.2 years ago
Giovanni
• 0
0
votes
3
replies
1.3k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI
limma
limmaGUI
microRNA
GUI
limma
limmaGUI
microRNA
15.5 years ago
Gordon Smyth
50k
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray
Cancer
affy
limma
limmaGUI
Microarray
Cancer
affy
limma
limmaGUI
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
Gordon Smyth
50k
0
votes
3
replies
1.2k
views
spot filtering
limma
limmaGUI
limma
limmaGUI
updated 18.7 years ago by
michael watson IAH-C
★ 3.4k • written 18.8 years ago by
Brooke-Powell, Elizabeth
▴ 170
0
votes
3
replies
1.2k
views
limma: print-tip loess and empty spots
Normalization
GO
GUI
limma
limmaGUI
Normalization
GO
GUI
limma
limmaGUI
16.9 years ago
Gordon Smyth
50k
0
votes
3
replies
1.4k
views
LimmaGUI Error
Normalization
GO
limmaGUI
ASSIGN
Normalization
GO
limmaGUI
ASSIGN
18.7 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
3
replies
2.0k
views
Limma: correct calculation of B statistics (log odds)
limma
limmaGUI
limma
limmaGUI
updated 18.0 years ago by
Wittner, Ben
▴ 290 • written 18.0 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray
Genetics
limma
limmaGUI
Microarray
Genetics
limma
limmaGUI
updated 18.0 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.0 years ago by
Gordon Smyth
50k
1
vote
3
replies
309
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 4 days ago by
Gordon Smyth
50k • written 9 days ago by
Simran
• 0
0
votes
2
replies
2.2k
views
problem with tkrplot installation
limmaGUI
limmaGUI
updated 15.7 years ago by
James W. MacDonald
65k • written 15.7 years ago by
A Yulandi
▴ 20
0
votes
2
replies
1.2k
views
"limma" and "Imagene"
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 19.8 years ago by
Gordon Smyth
50k • written 19.8 years ago by
Breuk102
▴ 50
0
votes
2
replies
867
views
Problem loading files into limmaGUI
limma
limmaGUI
limma
limmaGUI
updated 19.8 years ago by
Gordon Smyth
50k • written 19.8 years ago by
Elva Diaz
▴ 10
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI
limmaGUI
affylmGUI
limmaGUI
updated 15.7 years ago by
Ross Lazarus
▴ 90 • written 15.7 years ago by
Jarno Tuimala
▴ 140
0
votes
2
replies
1.2k
views
limmaGUI: target file and spot file
limmaGUI
limmaGUI
updated 15.7 years ago by
Mark Cowley
▴ 910 • written 15.7 years ago by
Jamila Bernardi
▴ 10
0
votes
2
replies
849
views
Fwd: Getting LimmaGUI to run
limmaGUI
limmaGUI
updated 18.8 years ago by
Rob J Goedman
▴ 40 • written 18.8 years ago by
chris umbricht
▴ 110
0
votes
2
replies
265
views
limma model matrix questions
limmaGUI
limma
pairedsamples
8 weeks ago
whyw6948
• 0
0
votes
2
replies
880
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization
limmaGUI
Normalization
limmaGUI
updated 20.5 years ago by
Gordon Smyth
50k • written 20.5 years ago by
ying chen
▴ 40
1
vote
2
replies
940
views
Limma adj.p.value the same for many different p.values
limmaGUI
limma
adj.p.value
StatisticalMethod
18 months ago
walkerrh95
• 0
0
votes
2
replies
974
views
Limma: background correction. Use or ignore?
limmaGUI
limmaGUI
updated 18.1 years ago by
James W. MacDonald
65k • written 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
2
replies
943
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma
limmaGUI
ASSIGN
limma
limmaGUI
ASSIGN
updated 19.4 years ago by
Gordon Smyth
50k • written 19.4 years ago by
Breuk102
▴ 50
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics
limma
limmaGUI
Genetics
limma
limmaGUI
updated 18.4 years ago by
STKH Steen Krogsgaard
▴ 150 • written 18.4 years ago by
Cecilia McGregor
▴ 110
0
votes
2
replies
790
views
gcrma in affylmGUI
gcrma
limmaGUI
gcrma
limmaGUI
updated 19.9 years ago by
James Wettenhall
▴ 1000 • written 19.9 years ago by
Luckey, John
▴ 90
0
votes
2
replies
1.2k
views
limmaGUI: Warning: ActiveTcl could not be found....
limmaGUI
limmaGUI
updated 20.5 years ago by
A.J. Rossini
▴ 810 • written 20.5 years ago by
Marcelo Luiz de Laia
▴ 770
0
votes
2
replies
1.1k
views
limmaGUI: Warning: ActiveTcl could not be found...
limmaGUI
limmaGUI
updated 20.5 years ago by
Marcelo Luiz de Laia
▴ 770 • written 20.5 years ago by
James Wettenhall
▴ 1000
0
votes
2
replies
889
views
LimmaGUI Background corrections
limmaGUI
limmaGUI
updated 19.6 years ago by
Gordon Smyth
50k • written 19.6 years ago by
Elizabeth Brooke-Powell
▴ 160
0
votes
2
replies
1.1k
views
help for limmaGUI
Microarray
limmaGUI
Microarray
limmaGUI
updated 16.9 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 16.9 years ago by
Ziping Zhang
▴ 10
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics
Normalization
limma
GeneSpring
limmaGUI
Genetics
Normalization
limma
GeneSpring
18.4 years ago
Gordon Smyth
50k
0
votes
2
replies
1.1k
views
problem detected during utilization of LimmaGUI
Microarray
limmaGUI
Microarray
limmaGUI
updated 14.4 years ago by
Seth Falcon
★ 7.4k • written 14.4 years ago by
Susana Gomes
▴ 10
0
votes
1
reply
839
views
LimmaGUI and limma
limma
limmaGUI
limma
limmaGUI
updated 19.6 years ago by
James Wettenhall
▴ 1000 • written 19.6 years ago by
Binita Dutta
▴ 100
0
votes
1
reply
899
views
limmaGUI and Agilent output files!
Microarray
limmaGUI
Microarray
limmaGUI
updated 19.8 years ago by
James Wettenhall
▴ 1000 • written 19.8 years ago by
Adrian Peres
▴ 30
0
votes
1
reply
784
views
Setting the spacing between duplicates in limmaGUI
limmaGUI
limmaGUI
updated 20.5 years ago by
Gordon Smyth
50k • written 20.5 years ago by
Peter Baker CMIS, Indooroopilly
▴ 80
0
votes
1
reply
951
views
LimmaGUI
limmaGUI
limmaGUI
updated 20.2 years ago by
James W. MacDonald
65k • written 20.2 years ago by
Binita Dutta
▴ 100
0
votes
1
reply
1.5k
views
Analysis Interface Projects
limma
limmaGUI
limma
limmaGUI
updated 20.6 years ago by
Dave Waddell
▴ 160 • written 20.6 years ago by
James Wettenhall
▴ 1000
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 15.9 years ago by
Wang, Jixin
▴ 130 • written 15.9 years ago by
Keith Satterley
▴ 450
0
votes
1
reply
1.0k
views
Re: Limma GUI exporting
Microarray
limma
affylmGUI
limmaGUI
Microarray
limma
affylmGUI
limmaGUI
19.8 years ago
James Wettenhall
▴ 1000
0
votes
1
reply
1.2k
views
One-Color Agilent Data into Limma GUI
GO
limma
limmaGUI
GO
limma
limmaGUI
updated 16.5 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 16.5 years ago by
elliot harrison
▴ 230
0
votes
1
reply
1.1k
views
asMatrixWeights: weights of unexpected shape
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 15.5 years ago by
Christine Voellenkle
▴ 90 • written 15.5 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.5k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization
limma
limmaGUI
Normalization
limma
limmaGUI
updated 15.5 years ago by
Paolo Innocenti
▴ 320 • written 15.5 years ago by
Christine Voellenkle
▴ 90
50 results • Page
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Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
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