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limpa
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Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 5 hours ago by
ATpoint
★ 5.0k • written 2 days ago by
DN
• 0
1
vote
3
replies
244
views
limpa analysis advice
limpa
updated 5 days ago by
Gordon Smyth
53k • written 8 days ago by
SamGG
▴ 360
0
votes
7
replies
406
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 2 days ago by
Gordon Smyth
53k • written 10 days ago by
emily.wolfrum
• 0
0
votes
2
replies
261
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
16 days ago • updated 2 days ago
Andrew Pattison
• 0
0
votes
1
reply
244
views
PTM analysis in LIMPA
limpa
updated 8 days ago by
Gordon Smyth
53k • written 7 weeks ago by
Diego FGR
• 0
1
vote
4
replies
490
views
Large logFC but somewhat high FDR
limpa
8 weeks ago • updated 7 weeks ago
JKim
• 0
0
votes
2
replies
257
views
limpa - drivers for unusually high standard error?
limpa
updated 8 weeks ago by
Gordon Smyth
53k • written 8 weeks ago by
Julia Broadbent
• 0
2
votes
2
replies
258
views
Post translational modifications and phosphoproteomics in limpa?
limpa
updated 8 days ago by
Gordon Smyth
53k • written 10 weeks ago by
james.eapen
• 0
0
votes
2
replies
471
views
Help with defining groups
limpa
updated 8 days ago by
Gordon Smyth
53k • written 3 months ago by
Phinney, Brett
▴ 10
3
votes
1
reply
459
views
Limpa Pipeline Order
limma
limpa
updated 5 months ago by
Gordon Smyth
53k • written 5 months ago by
abadgerw
• 0
0
votes
2
replies
1.5k
views
Limma trend with limpa
limpa
limma
trend
updated 8 months ago by
Gordon Smyth
53k • written 8 months ago by
Alejandro
• 0
11 results • Page
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Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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