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Comment: Merging samples from different sequencing runs
by
Zainab
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0
Thanks Michael! I've included the factors of unwanted variation to get the PCA plot on the right. Is that a suitable approach to combine re…
Comment: How to adjust plots generated using psygenet2r?
by
helucro
▴
70
It's a base R plot, so you can not modify it post-generation. Running the `psygenetGene` doc example...
```
library(psygenet2r)
data(qr, pa…
Comment: Multifactorial Design for DESEQ2
by
ATpoint
★
2.4k
There is a section in the vignette that covers interactions and (depending on use case) how one can do a full factorial design to make inte…
Answer: Multifactorial Design for DESEQ2
by
Michael Love
39k
For questions about the experimental design, I recommend to consult with a local statistician. I have to reserve my time on the support sit…
Answer: Merging samples from different sequencing runs
by
Michael Love
39k
We often use RUV in the lab, and you would include the factors of unwanted variation in the design formula. See the workflow for example co…
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