Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
lmfit
•
reset
1
vote
1
reply
852
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma
lmfit
R
DifferentialExpression
updated 22 months ago by
ATpoint
★ 4.0k • written 22 months ago by
Dimitris
• 0
2
votes
3
replies
1.2k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 22 months ago by
Gordon Smyth
50k • written 2.8 years ago by
AyHi
• 0
0
votes
0
replies
730
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi
limma
lmm
lmfit
dmpFinder
2.8 years ago
kyleyxw
• 0
3
votes
4
replies
1.1k
views
lmFit, number of proteins
lmFit
2.9 years ago • updated 2.8 years ago
AyHi
• 0
1
vote
5
replies
1.3k
views
Limma for proteomic data! Please Help!
limma
voom
lmfit
ebayesfit
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
sa825
• 0
4
votes
6
replies
685
views
mean log2CPM after model fit (lmFit)
limma
lmFit
mean expression level
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
anna
• 0
2
votes
2
replies
860
views
design matrix and correlate variable
limma
lmfit
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
mouton.alice
▴ 10
2
votes
2
replies
1.1k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma
lmfit
voom
limma design matrix
voomwithqualityweights
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
kediggins
▴ 10
1
vote
8
replies
1.6k
views
Design matrix for regressing gene expression on a continuous variable - age
limma
lmfit
design matrix
r
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
anupriya.dalmia
• 0
1
vote
7
replies
1.5k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.1 years ago
darthratus
• 0
2
votes
3
replies
1.6k
views
Differential expression of nomalised and log2 transformed data in limma
limma
lmfit
model.matrix
differential gene expression
6.5 years ago
stinehedensted
• 0
2
votes
5
replies
2.3k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
wewolski
▴ 10
0
votes
3
replies
1.2k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma
lmfit
weight
individual
7.1 years ago
stephane.cauchi
▴ 10
4
votes
8
replies
1.8k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma
illumina450k
lmfit
updated 7.4 years ago by
Ryan C. Thompson
★ 7.9k • written 7.4 years ago by
DSP
• 0
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma
agilent
microarray
lmfit
model.matrix
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
Maximilian
▴ 10
2
votes
4
replies
1.5k
views
Problem with Agilent microarray data analysis using limma package
limma
agilent microarrays
lmfit
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
Jesse L.
• 0
2
votes
5
replies
4.0k
views
Analysis using a linear model
lmfit
updated 8.4 years ago by
Gordon Smyth
50k • written 8.4 years ago by
libya.tahani
• 0
3
votes
6
replies
2.4k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma
illumina
microarray
lmfit
differential gene expression
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
kanacska
▴ 10
2
votes
2
replies
2.3k
views
limma: Using log2 fold changes as input for a linear model fit
limma
logfc
lmfit
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
Moritz E. Beber
▴ 10
4
votes
3
replies
4.6k
views
p-values from robust linear model in LIMMA
limma
lmFit
updated 9.2 years ago by
Gordon Smyth
50k • written 9.8 years ago by
Arvid Sondén
▴ 40
2
votes
8
replies
2.1k
views
lmFit only deals with numerical values (data matrix object)?
limma
lmFit
updated 9.2 years ago by
Gordon Smyth
50k • written 13.0 years ago by
Peter Davidsen
▴ 210
21 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United Kingdom,
2 minutes ago
WEHI, Melbourne, Australia,
9 minutes ago
United States,
18 minutes ago
Austria,
25 minutes ago
United States,
32 minutes ago
Traffic: 774 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6