Biostar LncRNA

Showing : lncRNA • reset

votes

replies

665

views

recount RNAseq gencode lncRNA gene annotation

updated 3.1 years ago by chris.wilks ▴ 40 • written 3.2 years ago by francesco.gandolfi ▴ 20

votes

875

views

GenomicFeatures TPM FPKM lncRNA

4.0 years ago Ina Hoeschele ▴ 620

votes

replies

1.6k

views

lncRNA featureCounts STAR annotation

updated 4.0 years ago by Wei Shi ★ 3.4k • written 4.0 years ago by inah ▴ 10

votes

replies

748

views

microarray lncrna microrna mrna raw data

updated 4.5 years ago by Axel Klenk ▴ 990 • written 4.5 years ago by ntagaras • 0

votes

replies

2.4k

views

arraystar lncRNA annotation annotationdbi

updated 6.8 years ago by xiangy7 • 0 • written 7.2 years ago by Kevin Coombes ▴ 430

5 results • Page 1 of 1

Recent ...

Replies

Answer: Discrepancy between plot colours during exomeCopy tutorial by Michael Love 37k

I’m not sure why the plot looks this way. You may want to look at one sample at a time. Also note there are more developed tools, I haven’t…

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Jiping Wang ▴ 70

that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…

Answer: Help with constructing design matrix for edgeR/limma by Gordon Smyth 45k

If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…

Comment: edgeR : results from goana and kegga functions show opposite sig. p-value by sharvari gujja ▴ 30

Thank you so much!

Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha by Hervé Pagès 15k

Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…

Votes

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: GDCprepare of RNAseq counts produces error

Awards • All

Teacher to Michael Love 37k