Biostar LncRNA

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588

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recount RNAseq gencode lncRNA gene annotation

updated 2.8 years ago by chris.wilks ▴ 30 • written 2.8 years ago by francesco.gandolfi ▴ 20

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2.4k

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arraystar lncRNA annotation annotationdbi

updated 6.4 years ago by xiangy7 • 0 • written 6.9 years ago by Kevin Coombes ▴ 430

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704

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microarray lncrna microrna mrna raw data

updated 4.1 years ago by Axel Klenk ▴ 980 • written 4.2 years ago by ntagaras • 0

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1.4k

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lncRNA featureCounts STAR annotation

updated 3.7 years ago by Wei Shi ★ 3.3k • written 3.7 years ago by inah • 0

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746

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GenomicFeatures TPM FPKM lncRNA

3.7 years ago Ina Hoeschele ▴ 610

5 results • Page 1 of 1

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Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ? by Hervé Pagès 15k

Yup, `getBSgenome()`.

Comment: using the goana function from edgeR by David Rengel ▴ 70

Thanks a lot Gordon, I misunderstood the way the analysis are performed, I see now it works the way topGO does. It is nice to have annotat…

Comment: Where can I find EnsDb.Hsapiens.v105? by Johannes Rainer ★ 1.9k

What version of R and `AnnotationHub` are you using? Release 105 is definitely available for the current Bioconductor release (3.14) with R…

Answer: Where can I find EnsDb.Hsapiens.v105? by Hervé Pagès 15k

Note that, alternatively, you can make a TxDb object: ``` library(GenomicFeatures) txdb <- makeTxDbFromEnsembl("Homo sapiens", release=105…

Comment: Test if a gene is NOT differentially expressed in DESeq2? by Michael Love 35k

You would just use a combination of lessAbs and greaterAbs (default).

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C: edgeR design matrix and contrasts: how to make contrast between groups that aren

Answer: Why is "SimpleList" not inheriting "list" ?

C: Reading gff files in R

A: Reading gff files in R

Comment: Warning messages on Apple M1 BigSur

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