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lncRNA
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how to convert lncRNA probe name or mRNA probe name to gene symbol
lncRNA
probeID
mRNA
genesymbol
14 months ago
Sooni
▴ 10
3
votes
3
replies
1.3k
views
Recount data for unannotated genes
recount
RNAseq
gencode
lncRNA
gene annotation
updated 5.0 years ago by
chris.wilks
▴ 70 • written 5.1 years ago by
francesco.gandolfi
▴ 20
0
votes
1
reply
1.5k
views
TPM and FPKM for lncRNA
GenomicFeatures
TPM
FPKM
lncRNA
5.9 years ago
Ina Hoeschele
▴ 620
0
votes
2
replies
2.9k
views
lncRNA annotation for featureCouns and STAR
lncRNA
featureCounts
STAR
annotation
updated 5.9 years ago by
Wei Shi
★ 3.6k • written 5.9 years ago by
inah
▴ 10
0
votes
2
replies
1.3k
views
R packages for differential expression analysis of raw data from arraystar microarrays
microarray
lncrna
microrna
mrna
raw data
updated 6.4 years ago by
Axel Klenk
★ 1.0k • written 6.4 years ago by
ntagaras
• 0
0
votes
3
replies
3.1k
views
Annotation DB for ArrayStar lncRNA arrays
arraystar
lncRNA
annotation
annotationdbi
updated 8.7 years ago by
xiangy7
• 0 • written 9.1 years ago by
Kevin Coombes
▴ 430
6 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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