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log2
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8
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2.5k
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DESeq2 different log2FC and p-value filtering parameters results comparison
log2
DESeq2
20 months ago
User000
• 0
6
votes
8
replies
5.6k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 16 months ago by
James W. MacDonald
65k • written 8.0 years ago by
serpalma.v
▴ 60
3
votes
6
replies
1.8k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
16 months ago
Sara
• 0
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma
export
log2
data
agilent
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Jahn Davik
▴ 110
3
votes
1
reply
1.3k
views
log2 of normalized counts for further analyzes
DESeq2
log2
normalized
counts
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Laia
▴ 10
0
votes
1
reply
1.9k
views
How to plot the RMA log2 normalised data from Affymetrix
log2
RMA
Affymetrix
affy
Normalization
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Lara
• 0
0
votes
1
reply
861
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
johndavidgriner74
• 0
0
votes
0
replies
1.3k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.5 years ago
agdif
▴ 10
0
votes
0
replies
911
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.8 years ago
prakashpandey1111
• 0
0
votes
0
replies
770
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.8 years ago
Seymoo
• 0
10 results • Page
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Comment: fgsea fork
by
Sofa
• 0
Workshops and summer schools offer immersive learning experiences outside traditional academic settings, catering to diverse interests and …
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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