Bioconductor Log2FC

Showing : log2FC • reset

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605

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DESeq2 SingleCell log2FC

11 months ago paria.alipour • 0

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1.2k

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DESeq2 Log2FC RNASeqData

15 months ago Iwan • 0

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668

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Laia ▴ 10

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4.1k

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DESeq2 log2FC

19 months ago User000 • 0

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1.3k

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log2FC DESeq2 GSEA voom limma

updated 21 months ago by Gordon Smyth 50k • written 21 months ago by Yang Shi ▴ 10

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2.3k

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edger log2FC

written 4.5 years ago by matteo.buti • 0

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1.3k

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deseq2 log2fc standard error timecourse

updated 6.2 years ago by ellascottgm • 0 • written 6.2 years ago by Verena • 0

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1.3k

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deseq2 log2fc shrinkage

updated 6.3 years ago by Michael Love 41k • written 6.4 years ago by aec ▴ 90

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5.1k

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deseq2 L2FC log2fc

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by sup230 ▴ 30

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3.8k

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deseq2 log2fc

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by David R ▴ 90

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1.9k

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deseq2 chipseq counts log2fc error

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by robin.uchiyama • 0

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5.7k

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limma pvalue log2fc log2

updated 17 months ago by James W. MacDonald 65k • written 8.1 years ago by serpalma.v ▴ 60

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5.8k

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deseq2 differential gene expression log2fc

8.1 years ago Osvaldo ▴ 40

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2.3k

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deseq2 R log2fc

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by Sushant Pawar • 0

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1.8k

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scan Log2FC

updated 8.7 years ago by Gordon Smyth 50k • written 8.8 years ago by Vani ▴ 20

15 results • Page 1 of 1

Recent ...

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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