Bioconductor Logfoldchange

Showing : logfoldchange • reset

votes

replies

649

views

DESeq2 p-adjusted-value Logfoldchange

updated 20 months ago by Michael Love 40k • written 20 months ago by bjen731 ▴ 10

votes

replies

2.7k

views

deseq2 R logfoldchange rna-seq

4.3 years ago • updated 4.2 years ago pierre.marin • 0

votes

replies

6.2k

views

deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 2.3 years ago by Michael Love 40k • written 5.3 years ago by emi.sch ▴ 20

votes

replies

1.1k

views

DESeq2 logfoldchange counts

updated 4.7 years ago by Michael Love 40k • written 4.7 years ago by A ▴ 40

votes

replies

755

views

noiseq logfoldchange

5.4 years ago Aurora ▴ 20

vote

replies

936

views

deseq2 plotMA rnaseq logfoldchange

updated 5.6 years ago by Michael Love 40k • written 5.6 years ago by ap_vc21 • 0

votes

1.0k

views

outliers deseq2 logfoldchange

5.7 years ago lirongrossmann ▴ 80

votes

replies

1.2k

views

deseq2 logfoldchange variancestabilizingtransformation

updated 5.9 years ago by Michael Love 40k • written 5.9 years ago by lirongrossmann ▴ 80

votes

replies

2.5k

views

deseq2 interactions logfoldchange

updated 6.1 years ago by Michael Love 40k • written 6.1 years ago by rrcutler ▴ 70

votes

replies

1.5k

views

deseq2 logfoldchange

updated 6.9 years ago by Michael Love 40k • written 6.9 years ago by rraadd_8 • 0

votes

replies

941

views

limma logfoldchange

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by szenitha ▴ 20

vote

1.1k

views

limma logfoldchange

updated 7.3 years ago by Gordon Smyth 48k • written 7.3 years ago by moradzadeh_k921 • 0

vote

replies

1.1k

views

limma arrayweights logfoldchange neqc normalization

updated 7.3 years ago by svlachavas ▴ 810 • written 7.3 years ago by merella.stefania • 0

votes

replies

1.6k

views

deseq2 logfoldchange interactions

updated 7.5 years ago by Michael Love 40k • written 7.5 years ago by colaneri ▴ 30

votes

2.6k

views

deseq2 logfoldchange

updated 7.5 years ago by Michael Love 40k • written 7.5 years ago by g.atla ▴ 10

votes

replies

3.2k

views

clustering pca deseq2 edger logfoldchange

updated 7.5 years ago by Michael Love 40k • written 7.5 years ago by g.atla ▴ 10

vote

replies

1.2k

views

dexseq logfoldchange exon usage

7.8 years ago Assa Yeroslaviz ★ 1.5k

votes

replies

1.2k

views

limma logfoldchange limma design matrix paired samples affymetrix microarrays

updated 8.0 years ago by Ryan C. Thompson 7.8k • written 8.0 years ago by svlachavas ▴ 810

18 results • Page 1 of 1

Recent ...

Replies

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

Awards • All