Bioconductor Logfoldchange

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1.2k

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DESeq2 p-adjusted-value Logfoldchange

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by bjen731 ▴ 10

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4.2k

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deseq2 R logfoldchange rna-seq

6.0 years ago • updated 5.8 years ago pierre.marin • 0

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9.3k

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 4.0 years ago by Michael Love 43k • written 6.9 years ago by emi.sch ▴ 50

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1.8k

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DESeq2 logfoldchange counts

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by A ▴ 60

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1.3k

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noiseq logfoldchange

7.1 years ago Aurora ▴ 20

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1.3k

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deseq2 plotMA rnaseq logfoldchange

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by ap_vc21 • 0

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1.6k

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outliers deseq2 logfoldchange

7.3 years ago lirongrossmann ▴ 80

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2.2k

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deseq2 logfoldchange variancestabilizingtransformation

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by lirongrossmann ▴ 80

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3.2k

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deseq2 interactions logfoldchange

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by rrcutler ▴ 70

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2.2k

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deseq2 logfoldchange

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by rraadd_8 • 0

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1.5k

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limma logfoldchange

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by szenitha ▴ 20

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1.5k

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limma logfoldchange

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by moradzadeh_k921 • 0

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limma arrayweights logfoldchange neqc normalization

updated 9.0 years ago by svlachavas ▴ 840 • written 9.0 years ago by merella.stefania • 0

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2.2k

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deseq2 logfoldchange interactions

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by colaneri ▴ 30

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3.5k

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deseq2 logfoldchange

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by g.atla ▴ 10

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4.4k

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clustering pca deseq2 edger logfoldchange

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by g.atla ▴ 10

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1.7k

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dexseq logfoldchange exon usage

9.5 years ago Assa Yeroslaviz ★ 1.5k

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1.6k

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limma logfoldchange limma design matrix paired samples affymetrix microarrays

updated 9.7 years ago by Ryan C. Thompson ★ 7.9k • written 9.7 years ago by svlachavas ▴ 840

18 results • Page 1 of 1

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Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Answer: Limma trend with limpa by Gordon Smyth 52k

Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Popular Question to James W. MacDonald 68k