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summarizeoverlaps summarizedexperiment count matrix low counts rna-seq

updated 9.8 years ago by Valerie Obenchain ★ 6.8k • written 9.9 years ago by shania90.lk ▴ 10

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deseq2 HERVs low counts prefiltering dispersion estimates

updated 7.0 years ago by Michael Love 43k • written 7.1 years ago by rodrigo.duarte88 ▴ 40

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deseq2 dispersion low counts

10.4 years ago meeta.mistry ▴ 30

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

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C: DESeq2 Following RSEM

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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