Bioconductor Low counts

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summarizeoverlaps summarizedexperiment count matrix low counts rna-seq

updated 9.1 years ago by Valerie Obenchain ★ 6.8k • written 9.1 years ago by shania90.lk ▴ 10

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deseq2 HERVs low counts prefiltering dispersion estimates

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by rodrigo.duarte88 ▴ 40

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deseq2 dispersion low counts

9.7 years ago meeta.mistry ▴ 30

3 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Properly constructing a hypergeometric test

Comment: Error in retrieving clinical data

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