Showing : lpe • reset
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
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3
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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1.0k
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LPE errors
LPE LPE
updated 19.4 years ago by ▴ 70 • written 19.4 years ago by ▴ 40
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949
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 720
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1.1k
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Help with LPE error message
LPE LPE
updated 19.1 years ago by ▴ 70 • written 19.1 years ago by ▴ 140
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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977
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FDR adjustment in LPE
LPE LPE
updated 18.9 years ago by ▴ 70 • written 18.9 years ago by ▴ 40
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1
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936
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local pooled error
LPE LPE
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ★ 1.3k
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problem with LPE
LPE LPE
updated 20.2 years ago by ▴ 30 • written 20.2 years ago by ▴ 720
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900
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
15.2 years ago Dennis.Burian@faa.gov ▴ 90
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question about RMA and filtering
affy LPE affy LPE
20.8 years ago Phguardiol@aol.com ▴ 720
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936
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
20.6 years ago Gordon Smyth 50k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
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833
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.1 years ago Jain, Nitin ▴ 70
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823
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pools and tech rep
limma LPE limma LPE
18.9 years ago Ariel Chernomoretz ▴ 380
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853
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
18.6 years ago Jain, Nitin ▴ 70
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868
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incoherence with LPE
LPE LPE
18.6 years ago Jain, Nitin ▴ 70
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841
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LPE question
LPE LPE
18.2 years ago Jain, Nitin ▴ 70
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761
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A friendly mention of LPE package
LPE LPE
16.2 years ago pingzhao Hu ▴ 210
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1.0k
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LPE error and warnings
LPE LPE
19.4 years ago Stephanie Mewborn ▴ 40
22 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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