Showing : lpe • reset
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
15.2 years ago Dennis.Burian@faa.gov ▴ 90
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18
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2.3k
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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2
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
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3
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1.6k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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A friendly mention of LPE package
LPE LPE
16.2 years ago pingzhao Hu ▴ 210
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844
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LPE question
LPE LPE
18.2 years ago Jain, Nitin ▴ 70
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3
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2.5k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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868
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incoherence with LPE
LPE LPE
18.6 years ago Jain, Nitin ▴ 70
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0
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854
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
18.6 years ago Jain, Nitin ▴ 70
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825
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pools and tech rep
limma LPE limma LPE
18.9 years ago Ariel Chernomoretz ▴ 380
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1
reply
977
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FDR adjustment in LPE
LPE LPE
updated 18.9 years ago by ▴ 70 • written 18.9 years ago by ▴ 40
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1
reply
937
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local pooled error
LPE LPE
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ★ 1.3k
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834
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.1 years ago Jain, Nitin ▴ 70
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1
reply
1.1k
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Help with LPE error message
LPE LPE
updated 19.1 years ago by ▴ 70 • written 19.1 years ago by ▴ 140
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805
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
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1
reply
1.0k
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LPE errors
LPE LPE
updated 19.4 years ago by ▴ 70 • written 19.4 years ago by ▴ 40
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0
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1.0k
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LPE error and warnings
LPE LPE
19.4 years ago Stephanie Mewborn ▴ 40
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1
reply
1.2k
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problem with LPE
LPE LPE
updated 20.2 years ago by ▴ 30 • written 20.2 years ago by ▴ 720
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7
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1.6k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
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0
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936
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
20.6 years ago Gordon Smyth 50k
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1
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949
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 720
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0
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897
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question about RMA and filtering
affy LPE affy LPE
20.8 years ago Phguardiol@aol.com ▴ 720
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Popular Question to James W. MacDonald 65k
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