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lpe
•
reset
0
votes
3
replies
2.5k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
18.2 years ago
McGee, Monnie
▴ 300
0
votes
18
replies
2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
affylmGUI
Cancer
gcrma
LPE
affylmGUI
updated 15.5 years ago by
Charlie Whittaker
▴ 70 • written 15.5 years ago by
Wolfgang Huber
★ 13k
0
votes
7
replies
1.6k
views
Statistical comparison of low replicate affy data
affy
gcrma
siggenes
LPE
affy
gcrma
siggenes
LPE
20.2 years ago
Matthew Hannah
▴ 940
0
votes
3
replies
1.5k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
1.2k
views
problem with LPE
LPE
LPE
updated 20.2 years ago by
Nitin Jain
▴ 30 • written 20.2 years ago by
Phguardiol@aol.com
▴ 720
0
votes
1
reply
1.1k
views
Help with LPE error message
LPE
LPE
updated 19.1 years ago by
Jain, Nitin
▴ 70 • written 19.1 years ago by
Puhong Gao
▴ 140
0
votes
2
replies
1.0k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer
gcrma
LPE
Cancer
gcrma
LPE
updated 15.5 years ago by
Patrick Aboyoun
★ 1.6k • written 15.5 years ago by
Charlie Whittaker
▴ 70
0
votes
0
replies
1.0k
views
LPE error and warnings
LPE
LPE
19.4 years ago
Stephanie Mewborn
▴ 40
0
votes
1
reply
1.0k
views
LPE errors
LPE
LPE
updated 19.4 years ago by
Jain, Nitin
▴ 70 • written 19.4 years ago by
Stephanie Mewborn
▴ 40
0
votes
1
reply
977
views
FDR adjustment in LPE
LPE
LPE
updated 18.9 years ago by
Jain, Nitin
▴ 70 • written 18.9 years ago by
jean-louis.ruelle@gskbio.com
▴ 40
0
votes
1
reply
947
views
Limma or something else ? plus Normalization question
limma
LPE
PROcess
limma
LPE
PROcess
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Phguardiol@aol.com
▴ 720
0
votes
1
reply
936
views
local pooled error
LPE
LPE
updated 19.0 years ago by
A.J. Rossini
▴ 210 • written 19.0 years ago by
Lana Schaffer
★ 1.3k
0
votes
0
replies
934
views
Limma or something else ? plus Normalization question
Normalization
affy
limma
LPE
PROcess
Normalization
affy
limma
LPE
PROcess
20.6 years ago
Gordon Smyth
50k
0
votes
0
replies
900
views
PLPE error
Microarray
affy
LPE
PLPE
Microarray
affy
LPE
PLPE
15.2 years ago
Dennis.Burian@faa.gov
▴ 90
0
votes
0
replies
897
views
question about RMA and filtering
affy
LPE
affy
LPE
20.8 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
867
views
incoherence with LPE
LPE
LPE
18.6 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
853
views
LPE method based on RMA vs. MAS5
Preprocessing
LPE
Preprocessing
LPE
18.6 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
841
views
LPE question
LPE
LPE
18.2 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
833
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.1 years ago
Jain, Nitin
▴ 70
0
votes
0
replies
823
views
pools and tech rep
limma
LPE
limma
LPE
18.9 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
805
views
LPE
cdf
affy
LPE
ASSIGN
cdf
affy
LPE
ASSIGN
19.2 years ago
Harry Hurd
▴ 60
0
votes
0
replies
761
views
A friendly mention of LPE package
LPE
LPE
16.2 years ago
pingzhao Hu
▴ 210
22 results • Page
1 of 1
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Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Problem for loading Bioconductor package in R
by
touchstoneeduseo
• 0
Touchstone is your gateway to English language proficiency! Our institute offers tailored courses designed to prepare students for success …
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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Gordon Smyth
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▴ 850
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Alejandro Reyes
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