Bioconductor Lpsymphony

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3.2k

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lpsymphony

updated 16 months ago by Mike Smith ★ 6.5k • written 6.2 years ago by mark.russo ▴ 40

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424

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lpsymphony Maaslin2

17 months ago Vic • 0

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536

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lpsymphony

2.1 years ago starsareintherose • 0

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774

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lpsymphony IHW

updated 4.4 years ago by Mike Smith ★ 6.5k • written 4.4 years ago by mattjdowle • 0

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730

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lpsymphony

5.3 years ago tohsumi • 0

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1.2k

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R lpsymphony mac os x

updated 5.4 years ago by Wolfgang Huber ★ 13k • written 5.4 years ago by tohsumi • 0

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1.4k

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lpsymphony package installation bioclite

updated 6.3 years ago by vladislav.kim ▴ 10 • written 6.4 years ago by sunnetau • 0

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1.4k

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IHW lpsymphony

updated 6.5 years ago by vladislav.kim ▴ 10 • written 6.5 years ago by Charlotte Soneson ▴ 170

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1.8k

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lpsymphony

updated 7.1 years ago by rreck ▴ 20 • written 7.1 years ago by Haiying.Kong ▴ 110

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1.6k

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lpsymphony

7.2 years ago Michael Love 41k

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1.0k

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lpsymphony R parameters control warm start

updated 7.8 years ago by Wolfgang Huber ★ 13k • written 7.9 years ago by chiel • 0

11 results • Page 1 of 1

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Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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