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Answer: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k
The default for `testEnrichment` is a one-tailed test. If you want a two-tailed test you have to specify that.
Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10
Thank you Luís, I just did put it's just: KYCG_plotVolcano(results,label_by="gene_name",alpha=0.01) (if I understand what you wanted), but …
Comment: When doing differential methylation using the sesame package, seems to only go by Lluís Revilla Sancho ▴ 730
Could you post the code to generate the first volcano? It seems you expect the results of testEnrichment to be like a volcano, why do you e…
Comment: Cannot download GEOmetadb sqlite file by Pablo • 0
I checked and the fixed in the developer version from Github. You can install it with remote: remotes::install_github("https://github.…
Comment: In the sesame package, what does the estimate output mean from testEnrichment() by ramiro.barrantes ▴ 10
Thank you very much for this! Makes sense. Still so much to learn about this.
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Answer: object 'hdac_targets' not found
Answer: object 'hdac_targets' not found
Answer: In the sesame package, what does the estimate output mean from testEnrichment()
C: Usability of ERCC spike-ins in standard RNAseq experiments
A: Usability of ERCC spike-ins in standard RNAseq experiments
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