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Showing :
maanova
•
reset
0
votes
5
replies
4.5k
views
Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixe…
limma
maanova
rnaseq
10.8 years ago • updated 2.3 years ago
Gordon Smyth
50k
0
votes
2
replies
2.8k
views
Random effects and variance components (was: Yet another nested design in limma)
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 14.8 years ago by
James W. MacDonald
65k • written 14.8 years ago by
Paolo Innocenti
▴ 320
0
votes
2
replies
2.7k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 14.9 years ago by
Paolo Innocenti
▴ 320 • written 14.9 years ago by
Gordon Smyth
50k
0
votes
0
replies
1.7k
views
R / Maanova: contrasts for interaction in model with 2 fixed factors
maanova
maanova
11.9 years ago
V. Oostra
▴ 30
0
votes
9
replies
1.7k
views
GO over representation analysis
Annotation
GO
maanova
Annotation
GO
maanova
updated 15.6 years ago by
Marc Carlson
★ 7.2k • written 15.6 years ago by
Heike Pospisil
▴ 310
1
vote
1
reply
1.5k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 18.0 years ago by
James W. MacDonald
65k • written 18.0 years ago by
sabrina.shao
▴ 220
0
votes
3
replies
1.5k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova
oligo
maanova
oligo
14.1 years ago • updated 14.0 years ago
boczniak767
▴ 720
0
votes
3
replies
1.4k
views
Limma vs Maanova, and use of covariates
limma
maanova
limma
maanova
18.3 years ago
Ingunn Berget
▴ 150
0
votes
4
replies
1.4k
views
valcano plot x-values
maanova
maanova
updated 18.0 years ago by
James W. MacDonald
65k • written 18.0 years ago by
sabrina.shao
▴ 220
0
votes
2
replies
1.3k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 15.6 years ago by
Kort, Eric
▴ 220 • written 15.6 years ago by
Marc Carlson
★ 7.2k
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 12.4 years ago by
Nicholas Lewin-Koh
▴ 430 • written 12.4 years ago by
Kurt Hornik
▴ 10
0
votes
1
reply
1.3k
views
limma(B) and maanova(La.svd) questions
limma
maanova
limma
maanova
18.5 years ago • updated 18.4 years ago
Aurélie Laugraud
▴ 20
0
votes
1
reply
1.2k
views
error with get(getOption("device")) in maanova with R 2.8.0
Kidney
maanova
Kidney
maanova
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Rob Tempelman
▴ 20
0
votes
0
replies
1.2k
views
manova contrast.matrix
maanova
maanova
14.3 years ago
David
▴ 860
0
votes
2
replies
1.2k
views
Coercing Normalized Data to exprSet
Biobase
PROcess
maanova
Biobase
PROcess
maanova
21.2 years ago
Barry Henderson
▴ 250
0
votes
0
replies
1.2k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
18.2 years ago
Morten
▴ 300
0
votes
6
replies
1.2k
views
maanova background correction
maanova
maanova
updated 20.8 years ago by
James W. MacDonald
65k • written 20.8 years ago by
Brendan M. Heavey
▴ 20
0
votes
0
replies
1.1k
views
R/maanova
Microarray
affy
limma
maanova
Microarray
affy
limma
maanova
18.3 years ago
Gary Churchill
▴ 10
0
votes
3
replies
1.0k
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
updated 16.1 years ago by
Marcelo Laia
▴ 450 • written 16.1 years ago by
Naomi Altman
★ 6.0k
0
votes
2
replies
1.0k
views
Maanova & createdata
Regression
maanova
Regression
maanova
updated 15.4 years ago by
Marcelo Laia
▴ 450 • written 15.4 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.0k
views
limma vs. maanova for expirement with both contrasts and continuous variables
limma
maanova
BAC
limma
maanova
BAC
17.2 years ago
Gordon Smyth
50k
0
votes
1
reply
1.0k
views
No degree of freedom in maanova
maanova
maanova
15.1 years ago • updated 15.0 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.0k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
14.9 years ago
Paolo Innocenti
▴ 320
0
votes
4
replies
1.0k
views
Using MAANOVA functions
Microarray
maanova
Microarray
maanova
updated 18.3 years ago by
Xiangqin Cui
▴ 20 • written 18.3 years ago by
Heather Maughan
▴ 10
0
votes
3
replies
989
views
Warning serious?
maanova
maanova
updated 14.7 years ago by
Juan Pedro Steibel
▴ 130 • written 14.7 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
975
views
Loop design - biological, technical replication
limma
maanova
limma
maanova
14.1 years ago
boczniak767
▴ 720
0
votes
0
replies
966
views
F tests of covariates in maanova
maanova
maanova
15.6 years ago
Kristen K Dang
▴ 50
0
votes
1
reply
959
views
error in maanova matest() with affymetrix
cdf
affy
maanova
affyio
cdf
affy
maanova
affyio
updated 16.6 years ago by
James W. MacDonald
65k • written 16.6 years ago by
Georg Otto
▴ 510
0
votes
1
reply
929
views
MAANOVA - how to collapse replicate spots
Genetics
maanova
Genetics
maanova
updated 15.9 years ago by
Marcelo Laia
▴ 450 • written 15.9 years ago by
Cecilia McGregor
▴ 110
0
votes
0
replies
917
views
error with get(getOption("device")) in maanova with R 2.8.0
GO
maanova
GO
maanova
15.4 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
916
views
Needed help on maanova fitmaanova function
affy
vsn
limma
maanova
affyio
affy
vsn
limma
maanova
affyio
16.7 years ago
Marcelo Laia
▴ 450
0
votes
2
replies
911
views
Does old workspace work?
Regression
probe
gcrma
PROcess
maanova
Regression
probe
gcrma
PROcess
maanova
updated 15.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.4 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
894
views
[MAANOVA] Contrasts for interaction levels - possible?
maanova
maanova
14.0 years ago
boczniak767
▴ 720
0
votes
1
reply
893
views
How to extract log ratios from two color arrays
GO
hgu133a
maanova
GO
hgu133a
maanova
15.6 years ago
Heike Pospisil
▴ 310
0
votes
0
replies
886
views
[SOLVED] Factorial experiment: No degree of freedom in maanova
maanova
maanova
16.1 years ago
Marcelo Laia
▴ 450
0
votes
2
replies
881
views
Filter before? Filter after? With maanova
Regression
probe
maanova
Regression
probe
maanova
updated 14.7 years ago by
rgentleman
★ 5.5k • written 14.7 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
849
views
Ignore maanova warning messages?
maanova
maanova
14.7 years ago
Loren Engrav
★ 1.0k
0
votes
1
reply
849
views
Options for spatial normalization?
Normalization
maanova
Normalization
maanova
updated 17.1 years ago by
Jay Konieczka
▴ 80 • written 17.1 years ago by
Oliver R. Homann
▴ 30
0
votes
1
reply
834
views
diagnostics
Genetics
limma
maanova
Genetics
limma
maanova
18.1 years ago
alex lam RI
▴ 310
0
votes
0
replies
799
views
2 conditions time series with different number of sample at each time point
TimeCourse
limma
timecourse
maanova
TimeCourse
limma
timecourse
maanova
16.2 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
798
views
multicore version of maanova
maanova
maanova
10.5 years ago
Guest User
★ 13k
0
votes
0
replies
794
views
What does maanova contrast?
maanova
maanova
14.7 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
794
views
Commands with maanova
Regression
maanova
Regression
maanova
14.7 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
764
views
To bioinformatics and maanova expert
PROcess
maanova
PROcess
maanova
14.7 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
755
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
16.1 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
755
views
maanova: missing observations in cov/cor
maanova
maanova
17.6 years ago
Matthew Vaughn
▴ 30
0
votes
0
replies
751
views
limma_design_matrix.
maanova
maanova
19.8 years ago
Gordon Smyth
50k
0
votes
1
reply
739
views
maanova rss for null model
maanova
maanova
updated 20.8 years ago by
James W. MacDonald
65k • written 20.8 years ago by
Brendan M. Heavey
▴ 20
0
votes
0
replies
734
views
maanova error
maanova
maanova
18.5 years ago
Georg Otto
▴ 510
0
votes
0
replies
732
views
Microarray analysis question
Microarray
Normalization
affy
limma
convert
maanova
Microarray
Normalization
affy
limma
15.8 years ago
Naomi Altman
★ 6.0k
50 results • Page
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Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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