Showing : maanova • reset
1
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1.5k
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adjPval and qvalue
qvalue maanova qvalue maanova
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 220
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2
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1.2k
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Coercing Normalized Data to exprSet
Biobase PROcess maanova Biobase PROcess maanova
21.2 years ago Barry Henderson ▴ 250
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6
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1.2k
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maanova background correction
maanova maanova
updated 20.8 years ago by 65k • written 20.8 years ago by ▴ 20
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1
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753
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maanova rss for null model
maanova maanova
updated 20.8 years ago by 65k • written 20.8 years ago by ▴ 20
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1
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651
views
How to output the results in MAANOVA
maanova maanova
updated 20.3 years ago by 50k • written 20.3 years ago by ▴ 100
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0
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641
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limma_design_matrix.
maanova maanova
19.8 years ago Marcus Gry Bj�rklund ▴ 30
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0
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766
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limma_design_matrix.
maanova maanova
19.8 years ago Gordon Smyth 50k
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0
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744
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maanova error
maanova maanova
18.6 years ago Georg Otto ▴ 510
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1
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1.3k
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limma(B) and maanova(La.svd) questions
limma maanova limma maanova
18.5 years ago Aurélie Laugraud ▴ 20
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3
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1.4k
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Limma vs Maanova, and use of covariates
limma maanova limma maanova
18.4 years ago Ingunn Berget ▴ 150
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4
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1.0k
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Using MAANOVA functions
Microarray maanova Microarray maanova
updated 18.3 years ago by ▴ 20 • written 18.4 years ago by ▴ 10
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0
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1.2k
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affymetrix in maanova, code
qvalue maanova qvalue maanova
18.3 years ago Morten ▴ 300
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1
reply
854
views
diagnostics
Genetics limma maanova Genetics limma maanova
18.2 years ago alex lam RI ▴ 310
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4
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1.4k
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valcano plot x-values
maanova maanova
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 220
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0
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763
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maanova: missing observations in cov/cor
maanova maanova
17.7 years ago Matthew Vaughn ▴ 30
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0
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1.1k
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limma vs. maanova for expirement with both contrasts and continuous variables
limma maanova BAC limma maanova BAC
17.3 years ago Gordon Smyth 50k
0
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1
reply
864
views
Options for spatial normalization?
Normalization maanova Normalization maanova
updated 17.1 years ago by ▴ 80 • written 17.1 years ago by ▴ 30
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0
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657
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MAANOVA help
maanova maanova
16.8 years ago Alessandro Fazio ▴ 70
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1
reply
931
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Needed help on maanova fitmaanova function
affy vsn limma maanova affyio affy vsn limma maanova affyio
16.7 years ago Marcelo Laia ▴ 450
0
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1
reply
971
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error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 510
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813
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2 conditions time series with different number of sample at each time point
TimeCourse limma timecourse maanova TimeCourse limma timecourse maanova
16.3 years ago Naomi Altman ★ 6.0k
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773
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Factorial experiment: No degree of freedom in maanova
maanova maanova
16.2 years ago Marcelo Laia ▴ 450
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3
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1.1k
views
Factorial experiment: No degree of freedom in maanova
maanova maanova
updated 16.2 years ago by ▴ 450 • written 16.2 years ago by ★ 6.0k
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892
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[SOLVED] Factorial experiment: No degree of freedom in maanova
maanova maanova
16.2 years ago Marcelo Laia ▴ 450
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1
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942
views
MAANOVA - how to collapse replicate spots
Genetics maanova Genetics maanova
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 110
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2
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2.9k
views
Random effects and variance components (was: Yet another nested design in limma)
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 14.9 years ago by 65k • written 14.9 years ago by ▴ 320
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0
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742
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Microarray analysis question
Microarray Normalization affy limma convert maanova Microarray Normalization affy limma
15.9 years ago Naomi Altman ★ 6.0k
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1
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903
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How to extract log ratios from two color arrays
GO hgu133a maanova GO hgu133a maanova
15.7 years ago Heike Pospisil ▴ 310
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9
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1.7k
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GO over representation analysis
Annotation GO maanova Annotation GO maanova
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 310
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2
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1.3k
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.6 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
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0
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977
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F tests of covariates in maanova
maanova maanova
15.6 years ago Kristen K Dang ▴ 50
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2
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939
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Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 1.0k
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2
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1.1k
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Maanova & createdata
Regression maanova Regression maanova
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ★ 1.0k
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1
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1.3k
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error with get(getOption("device")) in maanova with R 2.8.0
Kidney maanova Kidney maanova
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 20
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0
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935
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error with get(getOption("device")) in maanova with R 2.8.0
GO maanova GO maanova
15.5 years ago Wolfgang Huber ★ 13k
0
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1
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1.0k
views
No degree of freedom in maanova
maanova maanova
15.1 years ago Marcelo Laia ▴ 450
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0
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1.1k
views
Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
15.0 years ago Paolo Innocenti ▴ 320
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2
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2.7k
views
Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
updated 15.0 years ago by ▴ 320 • written 15.0 years ago by 50k
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2
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897
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Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 14.8 years ago by ★ 5.5k • written 14.8 years ago by ★ 1.0k
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0
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809
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Commands with maanova
Regression maanova Regression maanova
14.8 years ago Loren Engrav ★ 1.0k
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3
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1.0k
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Warning serious?
maanova maanova
updated 14.8 years ago by ▴ 130 • written 14.8 years ago by ★ 1.0k
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0
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808
views
What does maanova contrast?
maanova maanova
14.8 years ago Loren Engrav ★ 1.0k
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0
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860
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Ignore maanova warning messages?
maanova maanova
14.8 years ago Loren Engrav ★ 1.0k
0
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0
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772
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To bioinformatics and maanova expert
PROcess maanova PROcess maanova
14.8 years ago Loren Engrav ★ 1.0k
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0
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1.2k
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manova contrast.matrix
maanova maanova
14.4 years ago David ▴ 860
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0
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989
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Loop design - biological, technical replication
limma maanova limma maanova
14.1 years ago boczniak767 ▴ 720
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3
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1.5k
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[MAANOVA] Warnings in fitmaanova & information request
maanova oligo maanova oligo
14.1 years ago boczniak767 ▴ 720
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0
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906
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[MAANOVA] Contrasts for interaction levels - possible?
maanova maanova
14.1 years ago boczniak767 ▴ 720
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0
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731
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R/BioC/Mac keeps going and going
maanova maanova
14.0 years ago Loren Engrav ★ 1.0k
0
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1
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1.3k
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
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C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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